Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7103 g7103.t1 isoform g7103.t1 21197838 21198452
chr_2 g7103 g7103.t1 exon g7103.t1.exon1 21197838 21198452
chr_2 g7103 g7103.t1 cds g7103.t1.CDS1 21197838 21198452
chr_2 g7103 g7103.t1 TSS g7103.t1 NA NA
chr_2 g7103 g7103.t1 TTS g7103.t1 NA NA

Sequences

>g7103.t1 Gene=g7103 Length=615
ATGCACATCAGAGTTCAATGGGAATTTTTCCAAAACAAGTTCACTGGGCCCACTCAGTGT
AATAACTGCCAACGATTTGGGCATGGCGCACAAAACTGCCACGCAAATCCACGTTGCATT
AGATGCGCGAAAGATCATTCGTCAAAATCTTGTCCTTTACTGAAGCTAAATACTGGTACT
GCTGATCGTCCTAAAATCCCTGAAGAAAAACTCTGTTGTATTCATTGTGGCCAAAGACAC
ACCGCAAATTTTTCAAAATGTACAAAAAGACTTGCATTTACCTTAAATCGCGCAAACAAA
ACTGCTCAAACTCACAAAACAAACTTACAGAAAAATAAACATTCATTTCAACACGCGCCA
CAATTAAATGAGGTTAATTTTCCCTTCCTAAACAATAATTCAAATCAAAATGCTTGGACA
AATAATCAACAAACTAAAACTAACAATAACAAAAATCAAAGTGAGGTAAACAACAATTTT
TCGTTCGATCCATTCAAAATTTTCACTATCGTTAATGATGTCGTACAAACACTAACAAAA
ACAAGAAACATGACCGAAGTGTTTCAAGCCGTGTTCCAATTAGCCCAAAAATACCTTACC
GCTCAATATGTCTAA

>g7103.t1 Gene=g7103 Length=204
MHIRVQWEFFQNKFTGPTQCNNCQRFGHGAQNCHANPRCIRCAKDHSSKSCPLLKLNTGT
ADRPKIPEEKLCCIHCGQRHTANFSKCTKRLAFTLNRANKTAQTHKTNLQKNKHSFQHAP
QLNEVNFPFLNNNSNQNAWTNNQQTKTNNNKNQSEVNNNFSFDPFKIFTIVNDVVQTLTK
TRNMTEVFQAVFQLAQKYLTAQYV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g7103.t1 SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains 15 53 3.45e-05

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008270 zinc ion binding MF
GO:0003676 nucleic acid binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed