General information for g7106.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7106 is located on chr_2: 21219587..21221111 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7106 | g7106.t3 | isoform | g7106.t3 | 21219587 | 21221111 |
| chr_2 | g7106 | g7106.t3 | exon | g7106.t3.exon1 | 21219587 | 21219598 |
| chr_2 | g7106 | g7106.t3 | cds | g7106.t3.CDS1 | 21219587 | 21219598 |
| chr_2 | g7106 | g7106.t3 | exon | g7106.t3.exon2 | 21219660 | 21220592 |
| chr_2 | g7106 | g7106.t3 | cds | g7106.t3.CDS2 | 21219660 | 21220592 |
| chr_2 | g7106 | g7106.t3 | exon | g7106.t3.exon3 | 21220649 | 21220943 |
| chr_2 | g7106 | g7106.t3 | cds | g7106.t3.CDS3 | 21220649 | 21220921 |
| chr_2 | g7106 | g7106.t3 | exon | g7106.t3.exon4 | 21221001 | 21221111 |
| chr_2 | g7106 | g7106.t3 | TSS | g7106.t3 | 21221100 | 21221100 |
| chr_2 | g7106 | g7106.t3 | TTS | g7106.t3 | NA | NA |
Sequences
>g7106.t3 Gene=g7106 Length=1351
AAAGATTTGTCAGCCCCTCGTGTTTACTTGAGTTCGGCATTTCTTCATATTTAAAATAAA
ACTTTTAAACCTAATAAACTGGTGTTTTAAGTCTTTTGAAATAGTTTGATAATTTGTCAC
AAAAAATAGTTCGATGGAAGACGCTGCTAATTTTGATAAAATCATTAATTCGTCTCAAAA
GCTGATACCTAAACGGCTTTCATTTGATTTTCTTAATAATACATCATCATCTATCGCAGC
GAATGAAAGTTCTATCCACAAGAAAAGAAAGTTCACAGATATGGTTGATCAAGAGCAAAG
CAAAAGAGATGAAATCAATGAATCACTTAATAGCAGTACTTCATCGTTTTGTTCATCATG
GGAAACAAAATTATTACGCTCTGATCTTATCGAAGCGCAGTCTAGGATTACACAACTAAA
GAAAGAAATACAGCATCAGTCAACAATACAAACAGAATTGGAAATGAAGTTTGCTACTAA
AGAAAAAGCACTAGAGAATGAGAAAAATTGTCTAAAAAACAAAACTAGTGAATATGAACG
AGTTTTGAAAAAAAATCGTAGAAACGAAAGTCTAATGAAGGAAGAGATTGTAAAATTGAA
AAATCAGATAACTATTCAGAAGCAAAATTTTGATCAACAAATTTTTGAACTTCAAAATGA
AAATGAAAGTCTTAAAGAAGAGTTGATATATACAAGTAATGAATTAAATAATAGAATAAG
TGAAATTAATCGAGAAAATGCTGAATTAACTACTCGACTAATAACAGCAGAAACTGAAGC
TGCTACATTTCAAACTTCCAATAAGGATTTGAGACAGAAGCTTGAAGAATTTAAATCGCT
TAAAACTGATTTTGAGCAAGAAAAAATTAAACACCAAGAAGCTCTCCTCAAAATTAAAGA
TCTCGAATATGAAGTTAGTAGTTTTGGTGATTGGAAAGACATGGCTAAAGCATCTCAGTC
TCGTATGAATACAATGTCAGATATTGAGAAAGAAGTGACTCGTCTACGCCAAGTCAATAA
AAATTTGCATGATTCATTGGGAAATAAATTACTACTTGAAGAGGAAAATTATAGTCTAAA
AACCCGGTTGGAACGACTTGAGCAATCAAGTGTCAATCAAATTAAATTAGAGACACATAT
TGATGCATTGCAAAAAGAATTGAAAGAATGGAAGCAACTTGGCGTCGATTTTGTTCAAAA
AGGAGCTGCCAATAATCCTATCAATGTTCGTTCATATATTGAACAGCTCATGCATCGTGA
TTTATTGCTCGTTAGCGAAAAAACAAGTTTTTCATCTGAAAAATCCACTATGGAAAGTCA
AAAGACAGATTTGAAAAATCAAAATGATAGT
>g7106.t3 Gene=g7106 Length=406
MEDAANFDKIINSSQKLIPKRLSFDFLNNTSSSIAANESSIHKKRKFTDMVDQEQSKRDE
INESLNSSTSSFCSSWETKLLRSDLIEAQSRITQLKKEIQHQSTIQTELEMKFATKEKAL
ENEKNCLKNKTSEYERVLKKNRRNESLMKEEIVKLKNQITIQKQNFDQQIFELQNENESL
KEELIYTSNELNNRISEINRENAELTTRLITAETEAATFQTSNKDLRQKLEEFKSLKTDF
EQEKIKHQEALLKIKDLEYEVSSFGDWKDMAKASQSRMNTMSDIEKEVTRLRQVNKNLHD
SLGNKLLLEEENYSLKTRLERLEQSSVNQIKLETHIDALQKELKEWKQLGVDFVQKGAAN
NPINVRSYIEQLMHRDLLLVSEKTSFSSEKSTMESQKTDLKNQNDS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7106.t3 | Coils | Coil | Coil | 78 | 98 | - |
| 8 | g7106.t3 | Coils | Coil | Coil | 117 | 215 | - |
| 7 | g7106.t3 | Coils | Coil | Coil | 223 | 243 | - |
| 10 | g7106.t3 | Coils | Coil | Coil | 281 | 301 | - |
| 5 | g7106.t3 | Coils | Coil | Coil | 305 | 325 | - |
| 6 | g7106.t3 | Coils | Coil | Coil | 329 | 349 | - |
| 4 | g7106.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 406 | - |
| 2 | g7106.t3 | PANTHER | PTHR23168:SF0 | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 | 39 | 403 | 2.0E-23 |
| 3 | g7106.t3 | PANTHER | PTHR23168 | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1 | 39 | 403 | 2.0E-23 |
| 1 | g7106.t3 | Pfam | PF05557 | Mitotic checkpoint protein | 82 | 403 | 1.1E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007094 | mitotic spindle assembly checkpoint signaling | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
