Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7115 g7115.t103 TTS g7115.t103 21263047 21263047
chr_2 g7115 g7115.t103 isoform g7115.t103 21263156 21264425
chr_2 g7115 g7115.t103 exon g7115.t103.exon1 21263156 21263273
chr_2 g7115 g7115.t103 cds g7115.t103.CDS1 21263268 21263273
chr_2 g7115 g7115.t103 exon g7115.t103.exon2 21263772 21263817
chr_2 g7115 g7115.t103 cds g7115.t103.CDS2 21263772 21263817
chr_2 g7115 g7115.t103 exon g7115.t103.exon3 21264028 21264425
chr_2 g7115 g7115.t103 cds g7115.t103.CDS3 21264028 21264161
chr_2 g7115 g7115.t103 TSS g7115.t103 21264887 21264887

Sequences

>g7115.t103 Gene=g7115 Length=562
AGAATTCCATCTGTGTTTTCGAAAACATATGTTACTCCTAGACGTCCATATGAAAAACCT
CGCTTGGATGCTGAATTAAGAGTTATCGGACAATTTGGTCTCCGTAACAAGCGTGAGGTA
TGGCGAGTCAAGTATACATTAGCAAAGATCCGTAAAGCTGCTCGTGAATTGCTTACACTT
GAAGAGAAAGATGAGAAACGTTTGTTTCAAGGAAATGCTCTTCTTCGTCGTCTTGTTCGT
ATTGGTGTGTTAGACGAATCACGCATGAAGCTCGATTACGTTCTTGGTTTAAAAATTGAA
GATTTCTTAGAACGTCGCTTGCAGACTCAAGTTTTCAAACTCGGTTTGGCTAAATCTTAT
CATCATGCTCGCGTTCTTATCCGACAAAGACATATTCGTCGTCAACATCCCATCATTTGT
CGTTCGTTTGGACTCGCAGAAACNCATTGATTTCTCATTGAAGTCACCATTCGGTGGTGG
ACGACCAGGTCGCGTCAAGCGAAAGAATATGAAGAAGGGTCAAGGTGGTAGCGGTGGCGC
TGATGAAGAAGAAGAGGATTAA

>g7115.t103 Gene=g7115 Length=61
MKLDYVLGLKIEDFLERRLQTQVFKLGLAKSYHHARVLIRQRHIRRQHPIICRSFGLAET
H

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g7115.t103 Gene3D G3DSA:3.10.290.10 - 18 45 2.4E-5
2 g7115.t103 PANTHER PTHR11831:SF5 40S RIBOSOMAL PROTEIN S9 1 48 3.2E-24
3 g7115.t103 PANTHER PTHR11831 30S 40S RIBOSOMAL PROTEIN 1 48 3.2E-24
1 g7115.t103 Pfam PF01479 S4 domain 17 45 2.8E-5
5 g7115.t103 ProSitePatterns PS00632 Ribosomal protein S4 signature. 15 39 -
4 g7115.t103 SUPERFAMILY SSF55174 Alpha-L RNA-binding motif 2 45 1.32E-11

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003723 RNA binding MF
GO:0019843 rRNA binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed