General information for g7115.t215
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7115 is located on chr_2: 21264902..21266725 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7115 | g7115.t215 | isoform | g7115.t215 | 21264902 | 21266725 |
| chr_2 | g7115 | g7115.t215 | exon | g7115.t215.exon1 | 21264902 | 21266250 |
| chr_2 | g7115 | g7115.t215 | cds | g7115.t215.CDS1 | 21265096 | 21266250 |
| chr_2 | g7115 | g7115.t215 | exon | g7115.t215.exon2 | 21266304 | 21266725 |
| chr_2 | g7115 | g7115.t215 | cds | g7115.t215.CDS2 | 21266304 | 21266390 |
| chr_2 | g7115 | g7115.t215 | TSS | g7115.t215 | NA | NA |
| chr_2 | g7115 | g7115.t215 | TTS | g7115.t215 | NA | NA |
Sequences
>g7115.t215 Gene=g7115 Length=1771
ATGGAAGGAAACAAAGAAGGTACAGACAAAAAGGATGAATCTTTAGAGAGTAATGAAAAC
TCACAAGACAGTGAAATCTCTTCAAAAAAATCAGAAAATAGTGATAAAGTTGAAGAAGAG
CAACAACAACAACAGACAGCAAATCCTGATTTAAACGATGAAGATATTGATGAAGATCTT
CAGAAAAAAATTAAGGGTAATAATAATACTATATAAAAGATAGATGAATTTTGTTTCTTT
AAATAAATTGATATCAATTTTATTATTTTTATATTTTTAAAGGTGATGCGATTGGTGATA
CTCTTTACTCAGAACGATTCATTTTAAAGACACTGATGGAATTAAAAGATATGGATTATC
AGAAATTAGATAAAGAAATGGAATCTAAACTCGAAATTTTATGGGATACAACTATTGAGA
AAGCGGTTGTCGAAGTATTGCTCCAATACGGATTTCTTGAAATTGCTGGCATAATATTGG
ATAGTGCTAGTGATGAACGTTTGATTGAGATTATGCTCGGTATTATAGCTAATATGGGCT
GCATGAGCGAAACTAGAGAACAACTTTGCGATAATGAGGACGTCATGGCATCTATCCTCA
ATCAACTTTCTAGTAGTGATCCACTTATATTACATCAACTCATGAGGCTATTTCATTCTG
CAATTCTGTTTGAAAATAAATGCGATGAAAAGATATGGTTTTCTCACTTCCAAAAATGCG
AAAACTTCGTTGAAAAGTTCAGTTATATTTTCGCTAATTCAACTAGTAACACATTGCTAA
CAAGTTCCTTTGAAGCTCTAAATGGTATTTGTGCTAAGTTTGCAGCAATTGAATGTCAAT
CGGATTCAGAGAAAGACTCAAGTTTTCCACAACTTTTTGTGAAAAAATGCTTAGTAGACT
CAATGATTGAAGCATTCAATACTGTCATACCACAATTGAATGAAAGTGAATGTGGAAGTA
GTAGTAGTACCACAACTGATGTAATACCTACTCAAAGCCAAATTAAATTTATGAACCTCT
TTCTTGAACTCAATATGGTCATCTCACAATATGAATCATTATCGATGGAAGCATACAAAA
CTTCACTAACCGACTTTCAAAGATGTTTAAGTAGAATTTTATTTCCTTTATGTCACAAAA
TGTATCTACTGCCGCTCTCTTCAATTCATCAAGGGGTCATTGAAAATATAAATGACATCA
CACAAGCTCTTTCTGATCCATTTGATAAGCAAATTTTTTCACAGATGATTCAAATATGGG
ATCTCATTGAAGAAGACAAAGGAAAAGATCGATCAAATTCTGATTGGGATGATGAAGAAG
ATTCTACTTTTATAGACAGCGATGATTTTATGGAGAGTATATCAATGACAATTTTAGAAT
TTTTAACACGAACCGGATTCAATGCTGAACAAGAGAATTTCACTGCATCACTTAAGAAAT
TAAATTTAGATTTAGTGATGAAGCTTTTTGAGCGGATTAATGATAATGACGATCCCGAAG
ATGAAATTAAATCTGTTATACAGAAAATGAAAGTTAGCATTAAAGCAATATGGGAGATTG
ATGTGAACAAACATTAAGAATAATTTTGTAAGAGAGAGAGAGAGAAATAGAATTGATATA
GGATTTAAGTTATACATTTACCATTTTTATAAGGTAGATATTTAGGACTATTTAATTTTA
TTTTACTAATAAATATTAATTTAAAATAAAAACTGGCACTGTAACGATTTTTAAATAATT
CAAAAATCACTCGTTTTCTTTTTCGAAAAGC
>g7115.t215 Gene=g7115 Length=413
MELKDMDYQKLDKEMESKLEILWDTTIEKAVVEVLLQYGFLEIAGIILDSASDERLIEIM
LGIIANMGCMSETREQLCDNEDVMASILNQLSSSDPLILHQLMRLFHSAILFENKCDEKI
WFSHFQKCENFVEKFSYIFANSTSNTLLTSSFEALNGICAKFAAIECQSDSEKDSSFPQL
FVKKCLVDSMIEAFNTVIPQLNESECGSSSSTTTDVIPTQSQIKFMNLFLELNMVISQYE
SLSMEAYKTSLTDFQRCLSRILFPLCHKMYLLPLSSIHQGVIENINDITQALSDPFDKQI
FSQMIQIWDLIEEDKGKDRSNSDWDDEEDSTFIDSDDFMESISMTILEFLTRTGFNAEQE
NFTASLKKLNLDLVMKLFERINDNDDPEDEIKSVIQKMKVSIKAIWEIDVNKH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g7115.t215 | PANTHER | PTHR23424:SF23 | PROTEIN SAAL1 | 9 | 223 | 0 |
| g7115.t215 | PANTHER | PTHR23424 | SERUM AMYLOID A | 9 | 223 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
