General information for g7115.t78
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 40S ribosomal protein S9.
Parent gene
- The parent gene g7115 is located on chr_2: 21264902..21266725 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7115 | g7115.t78 | TTS | g7115.t78 | 21263047 | 21263047 |
| chr_2 | g7115 | g7115.t78 | isoform | g7115.t78 | 21263052 | 21264396 |
| chr_2 | g7115 | g7115.t78 | exon | g7115.t78.exon1 | 21263052 | 21263270 |
| chr_2 | g7115 | g7115.t78 | cds | g7115.t78.CDS1 | 21263156 | 21263270 |
| chr_2 | g7115 | g7115.t78 | exon | g7115.t78.exon2 | 21263772 | 21263831 |
| chr_2 | g7115 | g7115.t78 | cds | g7115.t78.CDS2 | 21263772 | 21263831 |
| chr_2 | g7115 | g7115.t78 | exon | g7115.t78.exon3 | 21264061 | 21264396 |
| chr_2 | g7115 | g7115.t78 | cds | g7115.t78.CDS3 | 21264061 | 21264161 |
| chr_2 | g7115 | g7115.t78 | TSS | g7115.t78 | 21264887 | 21264887 |
Sequences
>g7115.t78 Gene=g7115 Length=615
TGTTACTCCTAGACGTCCATATGAAAAACCTCGCTTGGATGCTGAATTAAGAGTTATCGG
ACAATTTGGTCTCCGTAACAAGCGTGAGGTATGGCGAGTCAAGTATACATTAGCAAAGAT
CCGTAAAGCTGCTCGTGAATTGCTTACACTTGAAGAGAAAGATGAGAAACGTTTGTTTCA
AGGAAATGCTCTTCTTCGTCGTCTTGTTCGTATTGGTGTGTTAGACGAATCACGCATGAA
GCTCGATTACGTTCTTGGTTTAAAAATTGAAGATTTCTTAGAACGTCGCTTGCAGACTCA
AGTTTTCAAACTCGGTTTGGCTAAATCTTATCATCACGTTCGTAAACAAGTCGTCAACAT
CCCATCATTTGTCGTTCGTTTGGACTCGCAGAAACNTGATTTCTCATTGAAGTCACCATT
CGGTGGTGGACGACCAGGTCGCGTCAAGCGAAAGAATATGAAGAAGGGTCAAGGTGGTAG
CGGTGGCGCTGATGAAGAAGAAGAGGATTAAACTGGAATTCACAGCAACATCTTTTCGCA
ACAAAAAATCTTATTAAAATCTTTTCCAGTTGGTGTGTGCGATAAAAAAGAACATTCAAA
CATAATAAATGAAAA
>g7115.t78 Gene=g7115 Length=91
MKLDYVLGLKIEDFLERRLQTQVFKLGLAKSYHHVRKQVVNIPSFVVRLDSQKXDFSLKS
PFGGGRPGRVKRKNMKKGQGGSGGADEEEED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7115.t78 | MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 91 | - |
| 1 | g7115.t78 | PANTHER | PTHR11831:SF23 | 40S RIBOSOMAL PROTEIN S9 | 1 | 91 | 1.6E-38 |
| 2 | g7115.t78 | PANTHER | PTHR11831 | 30S 40S RIBOSOMAL PROTEIN | 1 | 91 | 1.6E-38 |
| 3 | g7115.t78 | SUPERFAMILY | SSF55174 | Alpha-L RNA-binding motif | 2 | 50 | 5.59E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed