General information for g7117.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable nucleoporin Nup54.
Parent gene
- The parent gene g7117 is located on chr_2: 21270570..21271967 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7117 | g7117.t7 | TSS | g7117.t7 | 21268115 | 21268115 |
| chr_2 | g7117 | g7117.t7 | isoform | g7117.t7 | 21269010 | 21269890 |
| chr_2 | g7117 | g7117.t7 | exon | g7117.t7.exon1 | 21269010 | 21269290 |
| chr_2 | g7117 | g7117.t7 | exon | g7117.t7.exon2 | 21269354 | 21269890 |
| chr_2 | g7117 | g7117.t7 | cds | g7117.t7.CDS1 | 21269455 | 21269889 |
| chr_2 | g7117 | g7117.t7 | TTS | g7117.t7 | 21270622 | 21270622 |
Sequences
>g7117.t7 Gene=g7117 Length=818
GAGTTCATTTTCATTTGGTGGTGCTCAAACAACAACATCTGCACCAACGTTTGGTTTTGG
AAGTTCAGTAACTACCACAAGTGCACCCTCAGCTTTCAATTTTGGTGCTACAAATACTTC
TCAACCCTCTGCTTTTAGTTTTGGACAAACAGCTACTAGTCAGGCTCCAGCGTTTAATTT
TGGAGGAGGAACTTCAACTTCTCAAGCTCCTTCATTATTCGGAACTAGCAATACGAGTAC
TTTTGGAGGAGGAACAGCTTTTGGACAAACTGGATTTAGTGGATTTGGTCAACAAAATCA
ACAACAACAAACTACACTTTTGCCTGAGGAATTATTTCAACAAGCAATTTTTAATGTTTC
CATCTATGGTGATGAGCGCGATATGGTTCTTGCTAAATGGAATTATTTGCAAGCTCGATT
TGGCATAGGAAAAGCTATGTATTCACAATCGCAACCACCTGTTGATATTACACCACAAAA
TTATTTGTGTAGTTTCAAAGCAATGGGATATAGTCGGCTTCCTGGAAAAGATAATAAACT
GGGTCTGGTTGCGCTCAAATTCAATAGACCGTTGTCACAAATGAAAGATCAAGAACAGCA
ACTCATTCCAAAATTAAGTCAGATTTTTGGAAGCAAACCAAATTTGATAATTCATATTGA
GTCAATGAAATCACTTTCTGATGTTGCAACTCAGGTCATCATGTATGTAGAAGAAAAACT
GCCAAACTCTACTGAAACGAAACGTTTTCCAGCGACTGAAACAAACAGTTTTTTAAATCA
AGGCCATTTAAAATTTCAATTGCAGCAAATGGGAGTTG
>g7117.t7 Gene=g7117 Length=145
MVLAKWNYLQARFGIGKAMYSQSQPPVDITPQNYLCSFKAMGYSRLPGKDNKLGLVALKF
NRPLSQMKDQEQQLIPKLSQIFGSKPNLIIHIESMKSLSDVATQVIMYVEEKLPNSTETK
RFPATETNSFLNQGHLKFQLQQMGV
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
