Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein henna.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7122 g7122.t17 isoform g7122.t17 21344577 21345474
chr_2 g7122 g7122.t17 exon g7122.t17.exon1 21344577 21344877
chr_2 g7122 g7122.t17 cds g7122.t17.CDS1 21344579 21344877
chr_2 g7122 g7122.t17 exon g7122.t17.exon2 21344950 21345474
chr_2 g7122 g7122.t17 cds g7122.t17.CDS2 21344950 21345109
chr_2 g7122 g7122.t17 TSS g7122.t17 21345607 21345607
chr_2 g7122 g7122.t17 TTS g7122.t17 NA NA

Sequences

>g7122.t17 Gene=g7122 Length=826
ATGTACGCAAAATCTAATGGAACAAATGGCACGAATCTTTCAGAAGTTATCGGAAGTCCT
GTAAGTTCAGTGATACAAAAATAATAAATTGCGTCGTTGAATAAAGAGCATGAAAAGTAA
CATATAAAAAAAATATTGAGCATTCAAATGCATAATAAAACGAGTTATTTTCCTCACTTT
CAAAAGAGAGAAATCTTTAATATATATACTGCATTGGTATCAATCATTAATTAATACACA
TGAGTTGATGAAATTATCATATAATATTAAAATCAACATTGCGACTTGTTCATTTAAATG
CATCTGCTGATCGTGTTATTGCATTTATTTTACAGCCAAAGTTGAAGGAAGGCGGATCGT
ACATTATGGAGTCACATTCCTCATCAAGTTCTGGAAAAACAATTATAATATTTTCACCAA
CTGATCAAAGCAGTGCCGGTAGCTTAGCAAAAGTGCTTAAAATTTTCGACGTATTTAGTG
TCGATCTTACTCATATCGAATCACGATCATCACTGAGAGTTCCAGGCTATGAATTCATGG
TCGAGTGCGACGTTCACAAAAATCCCCATTTACACGATGCCCTGGAAATTCTCAAGGAAA
AATGTTCATATTTTCAAGTAATATCGCGTGCATATAATGAAGAAGAAACAAAAGAAGCAG
CTGATGAAGTTGTTCCTTGGTTCCCAAGACGTATTCGTGAATTAGATCGCTTCGCAAATC
AAATTTTATCGTATGGTGCTGAGCTCGATTCAGATCATCCTGGCTTCACAGACCCAGTCT
ATAGAGAACGTCGTAAATATTTTGCCGATATAGCATATCACTATAA

>g7122.t17 Gene=g7122 Length=153
MESHSSSSSGKTIIIFSPTDQSSAGSLAKVLKIFDVFSVDLTHIESRSSLRVPGYEFMVE
CDVHKNPHLHDALEILKEKCSYFQVISRAYNEEETKEAADEVVPWFPRRIRELDRFANQI
LSYGAELDSDHPGFTDPVYRERRKYFADIAYHY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g7122.t17 Gene3D G3DSA:1.10.800.10 Phenylalanine Hydroxylase 1 153 0.000
2 g7122.t17 PANTHER PTHR11473:SF23 TRYPTOPHAN 5-HYDROXYLASE 1 4 153 0.000
3 g7122.t17 PANTHER PTHR11473 AROMATIC AMINO ACID HYDROXYLASE 4 153 0.000
1 g7122.t17 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 104 153 0.000
8 g7122.t17 ProSiteProfiles PS51671 ACT domain profile. 15 91 10.425
7 g7122.t17 ProSiteProfiles PS51410 Biopterin-dependent aromatic amino acid hydroxylase family profile. 91 153 24.211
5 g7122.t17 SUPERFAMILY SSF55021 ACT-like 5 109 0.000
4 g7122.t17 SUPERFAMILY SSF56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 103 153 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009072 aromatic amino acid family metabolic process BP
GO:0005506 iron ion binding MF
GO:0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed