Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein henna.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7122 g7122.t3 TTS g7122.t3 21342968 21342968
chr_2 g7122 g7122.t3 isoform g7122.t3 21343416 21344178
chr_2 g7122 g7122.t3 exon g7122.t3.exon1 21343416 21343446
chr_2 g7122 g7122.t3 cds g7122.t3.CDS1 21343416 21343446
chr_2 g7122 g7122.t3 exon g7122.t3.exon2 21343500 21343652
chr_2 g7122 g7122.t3 cds g7122.t3.CDS2 21343500 21343652
chr_2 g7122 g7122.t3 exon g7122.t3.exon3 21343712 21344085
chr_2 g7122 g7122.t3 cds g7122.t3.CDS3 21343712 21344049
chr_2 g7122 g7122.t3 exon g7122.t3.exon4 21344164 21344178
chr_2 g7122 g7122.t3 TSS g7122.t3 NA NA

Sequences

>g7122.t3 Gene=g7122 Length=573
CATCCAAGTAAGCCGTTATACACGCCTGAACCTGATGTTGTTCATGAATTGATGGGACAT
GCTCCACTTTTTGCTGATCCAGCATTTGCACAATTTTCACAAGAAATTGGTTTAGCATCA
CTTGGTGCACCTGATGATTATATTGAAAAATTAGCAACATGCTTTTGGTTTACAGTTGAG
TATGGCTTGTGTAGAGAAAATGGAAATCTCAAGGCATACGGTGCTGGTTTACTTTCGAGT
TACGGTGAATTAGAATATTGTTTGAGTGACAAACCACAAATCAAAGATTTTGAACCTGAA
GTAACTGGTTTACAAAAATATCCAATCACTGAGTATCAACCAATTTACTTTGTTGCTGAT
AGCTTCGACAATGCAAAGGATAAAATGATTAAATTTGCTGATACGATTCCTCGTCCATTT
GGAGTCCGCTACAACGCATACACTCAATCAATTGAAGTTCTCGATACAAAACCACAGCTG
AATAATTTGCTTTCGAATATCAATTTGGAGATGCATATATTGCAGAACGCATTACAAAAA
TTAATGATTGATCCAGAAGTGAAATGTCCATGA

>g7122.t3 Gene=g7122 Length=173
MGHAPLFADPAFAQFSQEIGLASLGAPDDYIEKLATCFWFTVEYGLCRENGNLKAYGAGL
LSSYGELEYCLSDKPQIKDFEPEVTGLQKYPITEYQPIYFVADSFDNAKDKMIKFADTIP
RPFGVRYNAYTQSIEVLDTKPQLNNLLSNINLEMHILQNALQKLMIDPEVKCP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g7122.t3 Coils Coil Coil 147 167 -
8 g7122.t3 Gene3D G3DSA:1.10.800.10 Phenylalanine Hydroxylase 1 165 2.9E-71
2 g7122.t3 PANTHER PTHR11473 AROMATIC AMINO ACID HYDROXYLASE 1 164 2.6E-78
6 g7122.t3 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 15 34 5.5E-42
3 g7122.t3 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 55 73 5.5E-42
4 g7122.t3 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 86 105 5.5E-42
5 g7122.t3 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 121 139 5.5E-42
1 g7122.t3 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 1 162 1.6E-74
10 g7122.t3 ProSiteProfiles PS51410 Biopterin-dependent aromatic amino acid hydroxylase family profile. 1 165 67.753
7 g7122.t3 SUPERFAMILY SSF56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 1 164 9.29E-66

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009072 aromatic amino acid family metabolic process BP
GO:0005506 iron ion binding MF
GO:0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed