Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein henna.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7122 g7122.t4 TTS g7122.t4 21342968 21342968
chr_2 g7122 g7122.t4 isoform g7122.t4 21343416 21345474
chr_2 g7122 g7122.t4 exon g7122.t4.exon1 21343416 21343446
chr_2 g7122 g7122.t4 cds g7122.t4.CDS1 21343416 21343446
chr_2 g7122 g7122.t4 exon g7122.t4.exon2 21343500 21343652
chr_2 g7122 g7122.t4 cds g7122.t4.CDS2 21343500 21343652
chr_2 g7122 g7122.t4 exon g7122.t4.exon3 21343712 21344085
chr_2 g7122 g7122.t4 cds g7122.t4.CDS3 21343712 21344085
chr_2 g7122 g7122.t4 exon g7122.t4.exon4 21344164 21344469
chr_2 g7122 g7122.t4 cds g7122.t4.CDS4 21344164 21344469
chr_2 g7122 g7122.t4 exon g7122.t4.exon5 21344564 21344877
chr_2 g7122 g7122.t4 cds g7122.t4.CDS5 21344564 21344866
chr_2 g7122 g7122.t4 exon g7122.t4.exon6 21344946 21345139
chr_2 g7122 g7122.t4 exon g7122.t4.exon7 21345415 21345474
chr_2 g7122 g7122.t4 TSS g7122.t4 21345607 21345607

Sequences

>g7122.t4 Gene=g7122 Length=1432
ATGTACGCAAAATCTAATGGAACAAATGGCACGAATCTTTCAGAAGTTATCGGAAGTCCT
CCAAAGTTGAAGGAAGGCGGATCGTACATTATGGAGTCACATTCCTCATCAAGTTCTGGA
AAAACAATTATAATATTTTCACCAACTGATCAAAGCAGTGCCGGTAGCTTAGCAAAAGTG
CTTAAAATTTTCGACGTATTTAGTGTCGATCTTACTCATATCGAATCACGATCATCACTG
AGAGTTCCAGGTTAGCTATGAATTCATGGTCGAGTGCGACGTTCACAAAAATCCCCATTT
ACACGATGCCCTGGAAATTCTCAAGGAAAAATGTTCATATTTTCAAGTAATATCGCGTGC
ATATAATGAAGAAGAAACAAAAGAAGCAGCTGATGAAGTTGTTCCTTGGTTCCCAAGACG
TATTCGTGAATTAGATCGCTTCGCAAATCAAATTTTATCGTATGGTGCTGAGCTCGATTC
AGATCATCCTGGCTTCACAGACCCAGTCTATAGAGAACGTCGTAAATATTTTGCCGATAT
AGCATATCACTATAAACACGGCCAACCGCTTCCACGAGTTGAATATACAGATGAAGAAAT
AAAAACATGGGGTGTTGTTTTTAAAAATCTAACAAAGCTCTATCCAACACATGCATGTTA
TCAACACAACCATGTCTTCCAATTGTTGATAGAAAACTGCGGTTATCGCGAAGATAATAT
TCCACAATTAGAAGATGTTTCTAATTTCCTTAAAGATTGTACTGGTTTCACATTGCGACC
TGTTGCTGGTCTTCTCTCATCACGCGATTTTCTCGCTGGTCTTGCATTTCGAGTTTTTCA
TTCTACACAATACATTCGTCATCCAAGTAAGCCGTTATACACGCCTGAACCTGATGTTGT
TCATGAATTGATGGGACATGCTCCACTTTTTGCTGATCCAGCATTTGCACAATTTTCACA
AGAAATTGGTTTAGCATCACTTGGTGCACCTGATGATTATATTGAAAAATTAGCAACATG
CTTTTGGTTTACAGTTGAGTATGGCTTGTGTAGAGAAAATGGAAATCTCAAGGCATACGG
TGCTGGTTTACTTTCGAGTTACGGTGAATTAGAATATTGTTTGAGTGACAAACCACAAAT
CAAAGATTTTGAACCTGAAGTAACTGGTTTACAAAAATATCCAATCACTGAGTATCAACC
AATTTACTTTGTTGCTGATAGCTTCGACAATGCAAAGGATAAAATGATTAAATTTGCTGA
TACGATTCCTCGTCCATTTGGAGTCCGCTACAACGCATACACTCAATCAATTGAAGTTCT
CGATACAAAACCACAGCTGAATAATTTGCTTTCGAATATCAATTTGGAGATGCATATATT
GCAGAACGCATTACAAAAATTAATGATTGATCCAGAAGTGAAATGTCCATGA

>g7122.t4 Gene=g7122 Length=388
MVECDVHKNPHLHDALEILKEKCSYFQVISRAYNEEETKEAADEVVPWFPRRIRELDRFA
NQILSYGAELDSDHPGFTDPVYRERRKYFADIAYHYKHGQPLPRVEYTDEEIKTWGVVFK
NLTKLYPTHACYQHNHVFQLLIENCGYREDNIPQLEDVSNFLKDCTGFTLRPVAGLLSSR
DFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVVHELMGHAPLFADPAFAQFSQEIGLASLG
APDDYIEKLATCFWFTVEYGLCRENGNLKAYGAGLLSSYGELEYCLSDKPQIKDFEPEVT
GLQKYPITEYQPIYFVADSFDNAKDKMIKFADTIPRPFGVRYNAYTQSIEVLDTKPQLNN
LLSNINLEMHILQNALQKLMIDPEVKCP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7122.t4 CDD cd03347 eu_PheOH 47 352 0.0
11 g7122.t4 Coils Coil Coil 362 382 -
10 g7122.t4 Gene3D G3DSA:1.10.800.10 Phenylalanine Hydroxylase 1 357 1.6E-171
2 g7122.t4 PANTHER PTHR11473 AROMATIC AMINO ACID HYDROXYLASE 2 379 4.5E-184
12 g7122.t4 PIRSF PIRSF000336 TH 1 382 1.8E-196
5 g7122.t4 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 75 94 8.0E-70
8 g7122.t4 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 166 188 8.0E-70
4 g7122.t4 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 230 249 8.0E-70
7 g7122.t4 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 270 288 8.0E-70
3 g7122.t4 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 301 320 8.0E-70
6 g7122.t4 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 336 354 8.0E-70
1 g7122.t4 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 47 377 5.9E-176
14 g7122.t4 ProSiteProfiles PS51410 Biopterin-dependent aromatic amino acid hydroxylase family profile. 34 380 143.329
9 g7122.t4 SUPERFAMILY SSF56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 46 379 1.7E-144

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009072 aromatic amino acid family metabolic process BP
GO:0005506 iron ion binding MF
GO:0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed