Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein henna.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7122 g7122.t7 TTS g7122.t7 21342968 21342968
chr_2 g7122 g7122.t7 isoform g7122.t7 21343416 21345474
chr_2 g7122 g7122.t7 exon g7122.t7.exon1 21343416 21343446
chr_2 g7122 g7122.t7 cds g7122.t7.CDS1 21343416 21343446
chr_2 g7122 g7122.t7 exon g7122.t7.exon2 21343500 21343652
chr_2 g7122 g7122.t7 cds g7122.t7.CDS2 21343500 21343652
chr_2 g7122 g7122.t7 exon g7122.t7.exon3 21343712 21344085
chr_2 g7122 g7122.t7 cds g7122.t7.CDS3 21343712 21344085
chr_2 g7122 g7122.t7 exon g7122.t7.exon4 21344164 21344469
chr_2 g7122 g7122.t7 cds g7122.t7.CDS4 21344164 21344469
chr_2 g7122 g7122.t7 exon g7122.t7.exon5 21344564 21344877
chr_2 g7122 g7122.t7 cds g7122.t7.CDS5 21344564 21344877
chr_2 g7122 g7122.t7 exon g7122.t7.exon6 21344950 21345139
chr_2 g7122 g7122.t7 cds g7122.t7.CDS6 21344950 21345139
chr_2 g7122 g7122.t7 exon g7122.t7.exon7 21345259 21345474
chr_2 g7122 g7122.t7 cds g7122.t7.CDS7 21345259 21345327
chr_2 g7122 g7122.t7 TSS g7122.t7 21345607 21345607

Sequences

>g7122.t7 Gene=g7122 Length=1584
ATGTACGCAAAATCTAATGGAACAAATGGCACGAATCTTTCAGAAGTTATCGGAAGTCCT
GTAAGTTCAGTGATACAAAAATAATAAATTGCGTCGTTGAATAAAGAGCATGAAAAGTAA
CATATAAAAAAAATATTGAGCATTCAAATGCATAATAAAACGAGTTATTTTCCTCACTTT
CAAAAGAGAGAAATCTTTAATATATATACTGCATTGCCAAAGTTGAAGGAAGGCGGATCG
TACATTATGGAGTCACATTCCTCATCAAGTTCTGGAAAAACAATTATAATATTTTCACCA
ACTGATCAAAGCAGTGCCGGTAGCTTAGCAAAAGTGCTTAAAATTTTCGACGTATTTAGT
GTCGATCTTACTCATATCGAATCACGATCATCACTGAGAGTTCCAGGCTATGAATTCATG
GTCGAGTGCGACGTTCACAAAAATCCCCATTTACACGATGCCCTGGAAATTCTCAAGGAA
AAATGTTCATATTTTCAAGTAATATCGCGTGCATATAATGAAGAAGAAACAAAAGAAGCA
GCTGATGAAGTTGTTCCTTGGTTCCCAAGACGTATTCGTGAATTAGATCGCTTCGCAAAT
CAAATTTTATCGTATGGTGCTGAGCTCGATTCAGATCATCCTGGCTTCACAGACCCAGTC
TATAGAGAACGTCGTAAATATTTTGCCGATATAGCATATCACTATAAACACGGCCAACCG
CTTCCACGAGTTGAATATACAGATGAAGAAATAAAAACATGGGGTGTTGTTTTTAAAAAT
CTAACAAAGCTCTATCCAACACATGCATGTTATCAACACAACCATGTCTTCCAATTGTTG
ATAGAAAACTGCGGTTATCGCGAAGATAATATTCCACAATTAGAAGATGTTTCTAATTTC
CTTAAAGATTGTACTGGTTTCACATTGCGACCTGTTGCTGGTCTTCTCTCATCACGCGAT
TTTCTCGCTGGTCTTGCATTTCGAGTTTTTCATTCTACACAATACATTCGTCATCCAAGT
AAGCCGTTATACACGCCTGAACCTGATGTTGTTCATGAATTGATGGGACATGCTCCACTT
TTTGCTGATCCAGCATTTGCACAATTTTCACAAGAAATTGGTTTAGCATCACTTGGTGCA
CCTGATGATTATATTGAAAAATTAGCAACATGCTTTTGGTTTACAGTTGAGTATGGCTTG
TGTAGAGAAAATGGAAATCTCAAGGCATACGGTGCTGGTTTACTTTCGAGTTACGGTGAA
TTAGAATATTGTTTGAGTGACAAACCACAAATCAAAGATTTTGAACCTGAAGTAACTGGT
TTACAAAAATATCCAATCACTGAGTATCAACCAATTTACTTTGTTGCTGATAGCTTCGAC
AATGCAAAGGATAAAATGATTAAATTTGCTGATACGATTCCTCGTCCATTTGGAGTCCGC
TACAACGCATACACTCAATCAATTGAAGTTCTCGATACAAAACCACAGCTGAATAATTTG
CTTTCGAATATCAATTTGGAGATGCATATATTGCAGAACGCATTACAAAAATTAATGATT
GATCCAGAAGTGAAATGTCCATGA

>g7122.t7 Gene=g7122 Length=478
MHNKTSYFPHFQKREIFNIYTALPKLKEGGSYIMESHSSSSSGKTIIIFSPTDQSSAGSL
AKVLKIFDVFSVDLTHIESRSSLRVPGYEFMVECDVHKNPHLHDALEILKEKCSYFQVIS
RAYNEEETKEAADEVVPWFPRRIRELDRFANQILSYGAELDSDHPGFTDPVYRERRKYFA
DIAYHYKHGQPLPRVEYTDEEIKTWGVVFKNLTKLYPTHACYQHNHVFQLLIENCGYRED
NIPQLEDVSNFLKDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD
VVHELMGHAPLFADPAFAQFSQEIGLASLGAPDDYIEKLATCFWFTVEYGLCRENGNLKA
YGAGLLSSYGELEYCLSDKPQIKDFEPEVTGLQKYPITEYQPIYFVADSFDNAKDKMIKF
ADTIPRPFGVRYNAYTQSIEVLDTKPQLNNLLSNINLEMHILQNALQKLMIDPEVKCP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g7122.t7 CDD cd03347 eu_PheOH 137 442 0.0
12 g7122.t7 Coils Coil Coil 452 472 -
11 g7122.t7 Gene3D G3DSA:1.10.800.10 Phenylalanine Hydroxylase 30 447 4.1E-185
2 g7122.t7 PANTHER PTHR11473 AROMATIC AMINO ACID HYDROXYLASE 36 469 7.3E-195
13 g7122.t7 PIRSF PIRSF000336 TH 4 472 7.6E-206
4 g7122.t7 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 165 184 2.0E-69
7 g7122.t7 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 256 278 2.0E-69
3 g7122.t7 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 320 339 2.0E-69
5 g7122.t7 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 360 378 2.0E-69
8 g7122.t7 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 391 410 2.0E-69
6 g7122.t7 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 426 444 2.0E-69
1 g7122.t7 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 137 467 1.2E-175
17 g7122.t7 ProSiteProfiles PS51671 ACT domain profile. 48 124 10.425
16 g7122.t7 ProSiteProfiles PS51410 Biopterin-dependent aromatic amino acid hydroxylase family profile. 124 470 143.329
10 g7122.t7 SUPERFAMILY SSF55021 ACT-like 37 142 6.18E-15
9 g7122.t7 SUPERFAMILY SSF56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 136 469 3.53E-144
15 g7122.t7 TIGRFAM TIGR01268 Phe4hydrox_tetr: phenylalanine-4-hydroxylase 31 469 6.0E-230

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009072 aromatic amino acid family metabolic process BP
GO:0004505 phenylalanine 4-monooxygenase activity MF
GO:0005506 iron ion binding MF
GO:0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA
GO:0006559 L-phenylalanine catabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed