Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein henna.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7122 g7122.t9 TTS g7122.t9 21342968 21342968
chr_2 g7122 g7122.t9 isoform g7122.t9 21343416 21345474
chr_2 g7122 g7122.t9 exon g7122.t9.exon1 21343416 21343652
chr_2 g7122 g7122.t9 cds g7122.t9.CDS1 21343496 21343652
chr_2 g7122 g7122.t9 exon g7122.t9.exon2 21343712 21344085
chr_2 g7122 g7122.t9 cds g7122.t9.CDS2 21343712 21344085
chr_2 g7122 g7122.t9 exon g7122.t9.exon3 21344164 21344469
chr_2 g7122 g7122.t9 cds g7122.t9.CDS3 21344164 21344469
chr_2 g7122 g7122.t9 exon g7122.t9.exon4 21344564 21344877
chr_2 g7122 g7122.t9 cds g7122.t9.CDS4 21344564 21344877
chr_2 g7122 g7122.t9 exon g7122.t9.exon5 21344950 21345139
chr_2 g7122 g7122.t9 cds g7122.t9.CDS5 21344950 21345139
chr_2 g7122 g7122.t9 exon g7122.t9.exon6 21345415 21345474
chr_2 g7122 g7122.t9 cds g7122.t9.CDS6 21345415 21345474
chr_2 g7122 g7122.t9 TSS g7122.t9 21345607 21345607

Sequences

>g7122.t9 Gene=g7122 Length=1481
ATGTACGCAAAATCTAATGGAACAAATGGCACGAATCTTTCAGAAGTTATCGGAAGTCCT
CCAAAGTTGAAGGAAGGCGGATCGTACATTATGGAGTCACATTCCTCATCAAGTTCTGGA
AAAACAATTATAATATTTTCACCAACTGATCAAAGCAGTGCCGGTAGCTTAGCAAAAGTG
CTTAAAATTTTCGACGTATTTAGTGTCGATCTTACTCATATCGAATCACGATCATCACTG
AGAGTTCCAGGCTATGAATTCATGGTCGAGTGCGACGTTCACAAAAATCCCCATTTACAC
GATGCCCTGGAAATTCTCAAGGAAAAATGTTCATATTTTCAAGTAATATCGCGTGCATAT
AATGAAGAAGAAACAAAAGAAGCAGCTGATGAAGTTGTTCCTTGGTTCCCAAGACGTATT
CGTGAATTAGATCGCTTCGCAAATCAAATTTTATCGTATGGTGCTGAGCTCGATTCAGAT
CATCCTGGCTTCACAGACCCAGTCTATAGAGAACGTCGTAAATATTTTGCCGATATAGCA
TATCACTATAAACACGGCCAACCGCTTCCACGAGTTGAATATACAGATGAAGAAATAAAA
ACATGGGGTGTTGTTTTTAAAAATCTAACAAAGCTCTATCCAACACATGCATGTTATCAA
CACAACCATGTCTTCCAATTGTTGATAGAAAACTGCGGTTATCGCGAAGATAATATTCCA
CAATTAGAAGATGTTTCTAATTTCCTTAAAGATTGTACTGGTTTCACATTGCGACCTGTT
GCTGGTCTTCTCTCATCACGCGATTTTCTCGCTGGTCTTGCATTTCGAGTTTTTCATTCT
ACACAATACATTCGTCATCCAAGTAAGCCGTTATACACGCCTGAACCTGATGTTGTTCAT
GAATTGATGGGACATGCTCCACTTTTTGCTGATCCAGCATTTGCACAATTTTCACAAGAA
ATTGGTTTAGCATCACTTGGTGCACCTGATGATTATATTGAAAAATTAGCAACATGCTTT
TGGTTTACAGTTGAGTATGGCTTGTGTAGAGAAAATGGAAATCTCAAGGCATACGGTGCT
GGTTTACTTTCGAGTTACGGTGAATTAGAATATTGTTTGAGTGACAAACCACAAATCAAA
GATTTTGAACCTGAAGTAACTGGTTTACAAAAATATCCAATCACTGAGTATCAACCAATT
TACTTTGTTGCTGATAGCTTCGACAATGCAAAGGATAAAATGATTAAATTTGCTGATACG
ATTCCTCGTCCATTTGGAGTCCGCTACAACGCATACACTCAATCAATTGAAGTTCTCGAT
ACAAAACCACAGCTGAATAATTTGCTTTCGAATATCAATTTGGAGATGCATATATTGCAG
AACGCATTACAAAAATTGTAATTTCAATTTTTTGATTTCGCGTGACATTTTATTTTTTTC
TTCTTTTCAGAATGATTGATCCAGAAGTGAAATGTCCATGA

>g7122.t9 Gene=g7122 Length=466
MYAKSNGTNGTNLSEVIGSPPKLKEGGSYIMESHSSSSSGKTIIIFSPTDQSSAGSLAKV
LKIFDVFSVDLTHIESRSSLRVPGYEFMVECDVHKNPHLHDALEILKEKCSYFQVISRAY
NEEETKEAADEVVPWFPRRIRELDRFANQILSYGAELDSDHPGFTDPVYRERRKYFADIA
YHYKHGQPLPRVEYTDEEIKTWGVVFKNLTKLYPTHACYQHNHVFQLLIENCGYREDNIP
QLEDVSNFLKDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVVH
ELMGHAPLFADPAFAQFSQEIGLASLGAPDDYIEKLATCFWFTVEYGLCRENGNLKAYGA
GLLSSYGELEYCLSDKPQIKDFEPEVTGLQKYPITEYQPIYFVADSFDNAKDKMIKFADT
IPRPFGVRYNAYTQSIEVLDTKPQLNNLLSNINLEMHILQNALQKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g7122.t9 CDD cd03347 eu_PheOH 134 439 0.0
12 g7122.t9 Coils Coil Coil 449 466 -
11 g7122.t9 Gene3D G3DSA:1.10.800.10 Phenylalanine Hydroxylase 27 444 3.7E-185
2 g7122.t9 PANTHER PTHR11473 AROMATIC AMINO ACID HYDROXYLASE 33 465 1.3E-194
13 g7122.t9 PIRSF PIRSF000336 TH 4 466 1.6E-205
7 g7122.t9 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 162 181 1.8E-69
4 g7122.t9 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 253 275 1.8E-69
8 g7122.t9 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 317 336 1.8E-69
6 g7122.t9 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 357 375 1.8E-69
3 g7122.t9 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 388 407 1.8E-69
5 g7122.t9 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 423 441 1.8E-69
1 g7122.t9 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 134 464 1.1E-175
17 g7122.t9 ProSiteProfiles PS51671 ACT domain profile. 45 121 10.425
16 g7122.t9 ProSiteProfiles PS51410 Biopterin-dependent aromatic amino acid hydroxylase family profile. 121 466 143.572
10 g7122.t9 SUPERFAMILY SSF55021 ACT-like 34 139 5.95E-15
9 g7122.t9 SUPERFAMILY SSF56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 133 465 4.06E-144
15 g7122.t9 TIGRFAM TIGR01268 Phe4hydrox_tetr: phenylalanine-4-hydroxylase 28 466 7.9E-230

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009072 aromatic amino acid family metabolic process BP
GO:0004505 phenylalanine 4-monooxygenase activity MF
GO:0005506 iron ion binding MF
GO:0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA
GO:0006559 L-phenylalanine catabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values