General information for g7124.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7124 is located on chr_2: 21354237..21356774 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7124 | g7124.t2 | TTS | g7124.t2 | 21351127 | 21351127 |
| chr_2 | g7124 | g7124.t2 | isoform | g7124.t2 | 21351748 | 21353390 |
| chr_2 | g7124 | g7124.t2 | exon | g7124.t2.exon1 | 21351748 | 21352510 |
| chr_2 | g7124 | g7124.t2 | cds | g7124.t2.CDS1 | 21352328 | 21352510 |
| chr_2 | g7124 | g7124.t2 | exon | g7124.t2.exon2 | 21352575 | 21352813 |
| chr_2 | g7124 | g7124.t2 | cds | g7124.t2.CDS2 | 21352575 | 21352813 |
| chr_2 | g7124 | g7124.t2 | exon | g7124.t2.exon3 | 21352877 | 21352960 |
| chr_2 | g7124 | g7124.t2 | cds | g7124.t2.CDS3 | 21352877 | 21352960 |
| chr_2 | g7124 | g7124.t2 | exon | g7124.t2.exon4 | 21353022 | 21353264 |
| chr_2 | g7124 | g7124.t2 | cds | g7124.t2.CDS4 | 21353022 | 21353264 |
| chr_2 | g7124 | g7124.t2 | exon | g7124.t2.exon5 | 21353325 | 21353390 |
| chr_2 | g7124 | g7124.t2 | cds | g7124.t2.CDS5 | 21353325 | 21353337 |
| chr_2 | g7124 | g7124.t2 | TSS | g7124.t2 | NA | NA |
Sequences
>g7124.t2 Gene=g7124 Length=1395
TCAACAGCGGAACATTTAGAAGCGATCAAATTCATGAAGCTGGTCCGTTTACAATGAAAG
ATCTCGTTTCAATTATTCCGATGCAGGACCCCTTGATTGTGATCGAAGTGACAGGAAAAA
TTTTGCATGAAGCTCTTGAGAATGCTGTGTCGGCTTATCCTAAATTAGAAGGTCGTTTTC
CTCAAGTATCTGGTATATCATTCACTTTCAACCCCGATAGACCTCCAGGAAATCGTGTTG
AACATCGACTTGTTCGCATAGGTGATGAATGGTTGAAACTTGATGAAAAATACACATTGT
GCATTAAAGCATATATGCATGGAGGATGTGATGGATATACTATGTTTAAAAATTGTCCAA
TTCTAATGGATGAAGATGCTTGTCCTGAATTAGGCCTTGCAATACAAAATCATTTTAAAG
CAATAGATGTAAAGACCGGAAAAACAGGAAAGCATTCAAAACATCGTCAAAGTCTTGTTA
CAATTTCTCGAAGACACAGTATGATTCAAATGCTTGAAAACCTTGAACTTGATGGACCCT
GCCCTGTTCGCCTGCATCATCAACAACAATCAAGCAATTCACAACAACAGCAACCTCCTC
CACCTCAACAGAATATTTCTACAAGTGCAAAGCTGCTGAGACGAGCATCACTCGATGACT
TAGAGCAGTCGTCTTGTCAACTATGTCCCACAATTCAACATCGAATAGTGATGGTTCAAA
ATGAAGAACATTTAAAGCAGATGCTGCTTAGACGCGAAGCAATGGAAATGACAACTGAAA
TCATAAACGAATTGGATGAAAACAGTCCACAATAAGCAACTATAATGAATGACAATTTTC
GAACGTAATTTAATAAACCTAAACAAACTATTAGTGTATGATATCACATTCCCAAAAATA
AGTAAGAATTATTTTACTGAGAATGTGAATTGATATTAACCGATCCATCAAATTTGATAA
TTACACTGTATTATAAGAGATGAAATATATATTTTTGAGCTTTATTAGCGTATAAAAAGG
TGGAAAAAAAGATTTGTTTGTTCCTTTTGAGTGAGAAAATATGATAATTAGATTTGATTT
TAAAAAAAGTTTCTATTCTATTCTTGTTGTCAAATTATTAAAGAAACTAATGAAGCATGC
TGATGACATGCATCTACATAAAATATATTAAAATAGAAAGAGCTTAATGCTTTAATTTTG
ATCAGGAGAAAATTACACATAAAAGATTATGATAGGAAGAAGCCTTTTAATCAACAAATA
AAAATTATTGCACCATGACAAAAATTATTTTTTTCTTCTCTTTTCATATGTAGGTATAAA
TATTTCAGGCTAACTTCCATCCAAGTTGTTTCTTAATCTGAACACTATGTAACGGCTTTA
AAAATTTTGAAAAAA
>g7124.t2 Gene=g7124 Length=253
MKDLVSIIPMQDPLIVIEVTGKILHEALENAVSAYPKLEGRFPQVSGISFTFNPDRPPGN
RVEHRLVRIGDEWLKLDEKYTLCIKAYMHGGCDGYTMFKNCPILMDEDACPELGLAIQNH
FKAIDVKTGKTGKHSKHRQSLVTISRRHSMIQMLENLELDGPCPVRLHHQQQSSNSQQQQ
PPPPQQNISTSAKLLRRASLDDLEQSSCQLCPTIQHRIVMVQNEEHLKQMLLRREAMEMT
TEIINELDENSPQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7124.t2 | Gene3D | G3DSA:3.90.780.10 | - | 1 | 125 | 7.1E-28 |
| 5 | g7124.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 189 | - |
| 2 | g7124.t2 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 1 | 234 | 7.3E-34 |
| 3 | g7124.t2 | PANTHER | PTHR11575:SF24 | RIKEN CDNA 4933425L06 | 1 | 234 | 7.3E-34 |
| 1 | g7124.t2 | Pfam | PF02872 | 5’-nucleotidase, C-terminal domain | 1 | 99 | 6.7E-23 |
| 4 | g7124.t2 | SUPERFAMILY | SSF55816 | 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 1 | 105 | 1.44E-27 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0009166 | nucleotide catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
