General information for g7124.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7124 is located on chr_2: 21354237..21356774 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7124 | g7124.t4 | isoform | g7124.t4 | 21353390 | 21356494 |
| chr_2 | g7124 | g7124.t4 | exon | g7124.t4.exon1 | 21353390 | 21353763 |
| chr_2 | g7124 | g7124.t4 | cds | g7124.t4.CDS1 | 21353741 | 21353763 |
| chr_2 | g7124 | g7124.t4 | exon | g7124.t4.exon2 | 21353829 | 21354254 |
| chr_2 | g7124 | g7124.t4 | cds | g7124.t4.CDS2 | 21353829 | 21354254 |
| chr_2 | g7124 | g7124.t4 | exon | g7124.t4.exon3 | 21354331 | 21354736 |
| chr_2 | g7124 | g7124.t4 | cds | g7124.t4.CDS3 | 21354331 | 21354562 |
| chr_2 | g7124 | g7124.t4 | TTS | g7124.t4 | 21356209 | 21356209 |
| chr_2 | g7124 | g7124.t4 | exon | g7124.t4.exon4 | 21356342 | 21356494 |
| chr_2 | g7124 | g7124.t4 | TSS | g7124.t4 | 21356646 | 21356646 |
Sequences
>g7124.t4 Gene=g7124 Length=1359
GGTATTTTAAACGTTTGTGCTATATTATGACAAATCTGGAAAAATCGATAAAACTATTTT
TGTGAAACACTAAGTTATTGAATTAAAATTTTAAAAACTCATTTTGCTCGTTATGCAGTG
GAATAAAATAACATCAACTTTATTTATAATCATGCATCAGCAGAAGTTCGTGAGGCTGGG
AAGCGTGCAGTCGTACAAATTCAAACTAAAAATCCAAATTTAGTAGTTTCACCAGGCACT
TCAAAAACTCAAATAATTAAGTCATTACTCAAGCCAATTAGTCCCTCGAAATCTAATGCA
TCTAGTAGTAGCAGCATTAGCAGTGAAATGGGCGCCATGAAAGATCAATTAACAACTAGA
GGAGAAGAAGATAACGTAAAAAAGTTAACAATACTACATTACAACGATGTATATAACATT
GATCAGCAAGTGAAATCAGAGCCAATTGGAGGCGCGGCGCGTTTCACAACAGCAATTCAT
TCATTTAAACATTTGAATCCACTTGTGCTGTTTAGTGGTGACGCTTTTAATCCCTCTATG
CTTTCGACATTTACACAAGGTGAACAAATGATTCCAGTATTGAATAAAGTCGAAACGGCG
TGTGCTGTTTTTGGGAATCATGATTTCGATCATGGCTTAGATGTGCTTCAAAAATGGGTG
GAACAGACGAACTTTCCTTGGCTCATGTCAAATGTCATTGATAATGAAACAGGCCGACCA
CTGGGGAATGGCAAAATCAGTCACATTATATGTCATAATGATTTAAAAATTGGCTTAATG
GGATTAGTTGAGAAGGAATGGCTTGATACCTTGCCAACTATTGATCCAAATGAAGTGACA
TACATCGATTATGTGAAAGCGGGTAATCAACTTGCTGATGATCTTCTTAATGAAGGATGT
GATATAATAATTGCTCTCACACACATGCGTACACCAAATGACATAAATCTCGCACAAAAC
TGTCCCAAATTGTCATTAATTTTAGTTGTTTTATATAGGTGGTCATGATCATGTGTATGA
AATTGTTAAAGTGAATAATTTGAATGTAATCAAATCGGGCACTGATTTTAGACAATTCTC
AAAAATTACAATAAAAAAGTCGTTGAAAAATAATGAGCCACATTTAGACGTTGATATTGA
AAAGATTGATGTTACTTCTGCATTCGAAGAGGATTTAGATTTGAAAGCCGAATTAGCTCA
CTATAGTGAGATGATAGAATCAAAAATGGGAATTGTACTGGGTAATTTCTCAGTTGAGCT
TGATGCTCGTTTTGCAAAAATAAGAACAAGTGAAACTAATTTGGGAAATTGGATTACGGA
CATTGCTTTAGCAGCAACATGTGCGGACGTAGTTATTAT
>g7124.t4 Gene=g7124 Length=226
MGAMKDQLTTRGEEDNVKKLTILHYNDVYNIDQQVKSEPIGGAARFTTAIHSFKHLNPLV
LFSGDAFNPSMLSTFTQGEQMIPVLNKVETACAVFGNHDFDHGLDVLQKWVEQTNFPWLM
SNVIDNETGRPLGNGKISHIICHNDLKIGLMGLVEKEWLDTLPTIDPNEVTYIDYVKAGN
QLADDLLNEGCDIIIALTHMRTPNDINLAQNCPKLSLILVVLYRWS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7124.t4 | Gene3D | G3DSA:3.60.21.10 | - | 10 | 220 | 0 |
| 1 | g7124.t4 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 18 | 219 | 0 |
| 2 | g7124.t4 | PANTHER | PTHR11575:SF24 | RIKEN CDNA 4933425L06 | 18 | 219 | 0 |
| 3 | g7124.t4 | SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 15 | 219 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0009166 | nucleotide catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
