Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7124 g7124.t5 isoform g7124.t5 21353742 21356496
chr_2 g7124 g7124.t5 exon g7124.t5.exon1 21353742 21353750
chr_2 g7124 g7124.t5 cds g7124.t5.CDS1 21353743 21353750
chr_2 g7124 g7124.t5 exon g7124.t5.exon2 21353829 21354254
chr_2 g7124 g7124.t5 cds g7124.t5.CDS2 21353829 21354254
chr_2 g7124 g7124.t5 exon g7124.t5.exon3 21354331 21354736
chr_2 g7124 g7124.t5 cds g7124.t5.CDS3 21354331 21354562
chr_2 g7124 g7124.t5 exon g7124.t5.exon4 21356494 21356496
chr_2 g7124 g7124.t5 TSS g7124.t5 21356646 21356646
chr_2 g7124 g7124.t5 TTS g7124.t5 NA NA

Sequences

>g7124.t5 Gene=g7124 Length=844
AAGGCATCAGCAGAAGTTCGTGAGGCTGGGAAGCGTGCAGTCGTACAAATTCAAACTAAA
AATCCAAATTTAGTAGTTTCACCAGGCACTTCAAAAACTCAAATAATTAAGTCATTACTC
AAGCCAATTAGTCCCTCGAAATCTAATGCATCTAGTAGTAGCAGCATTAGCAGTGAAATG
GGCGCCATGAAAGATCAATTAACAACTAGAGGAGAAGAAGATAACGTAAAAAAGTTAACA
ATACTACATTACAACGATGTATATAACATTGATCAGCAAGTGAAATCAGAGCCAATTGGA
GGCGCGGCGCGTTTCACAACAGCAATTCATTCATTTAAACATTTGAATCCACTTGTGCTG
TTTAGTGGTGACGCTTTTAATCCCTCTATGCTTTCGACATTTACACAAGGTGAACAAATG
ATTCCAGTATTGAATAAAGTCGAAACGGCGTGTGCTGTTTTTGGGAATCATGATTTCGAT
CATGGCTTAGATGTGCTTCAAAAATGGGTGGAACAGACGAACTTTCCTTGGCTCATGTCA
AATGTCATTGATAATGAAACAGGCCGACCACTGGGGAATGGCAAAATCAGTCACATTATA
TGTCATAATGATTTAAAAATTGGCTTAATGGGATTAGTTGAGAAGGAATGGCTTGATACC
TTGCCAACTATTGATCCAAATGAAGTGACATACATCGATTATGTGAAAGCGGGTAATCAA
CTTGCTGATGATCTTCTTAATGAAGGATGTGATATAATAATTGCTCTCACACACATGCGT
ACACCAAATGACATAAATCTCGCACAAAACTGTCCCAAATTGTCATTAATTTTAGGTGGT
CATG

>g7124.t5 Gene=g7124 Length=222
MGAMKDQLTTRGEEDNVKKLTILHYNDVYNIDQQVKSEPIGGAARFTTAIHSFKHLNPLV
LFSGDAFNPSMLSTFTQGEQMIPVLNKVETACAVFGNHDFDHGLDVLQKWVEQTNFPWLM
SNVIDNETGRPLGNGKISHIICHNDLKIGLMGLVEKEWLDTLPTIDPNEVTYIDYVKAGN
QLADDLLNEGCDIIIALTHMRTPNDINLAQNCPKLSLILGGH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g7124.t5 CDD cd07406 MPP_CG11883_N 20 222 0e+00
7 g7124.t5 Gene3D G3DSA:3.60.21.10 - 10 222 0e+00
1 g7124.t5 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 18 222 0e+00
2 g7124.t5 PANTHER PTHR11575:SF24 RIKEN CDNA 4933425L06 18 222 0e+00
4 g7124.t5 PRINTS PR01607 Apyrase family signature 18 36 5e-07
3 g7124.t5 PRINTS PR01607 Apyrase family signature 189 206 5e-07
5 g7124.t5 PRINTS PR01607 Apyrase family signature 208 222 5e-07
6 g7124.t5 SUPERFAMILY SSF56300 Metallo-dependent phosphatases 15 222 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF
GO:0009166 nucleotide catabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed