General information for g7127.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7127 is located on chr_2: 21363580..21364924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7127 | g7127.t1 | isoform | g7127.t1 | 21361944 | 21363580 |
| chr_2 | g7127 | g7127.t1 | exon | g7127.t1.exon1 | 21361944 | 21362520 |
| chr_2 | g7127 | g7127.t1 | cds | g7127.t1.CDS1 | 21361944 | 21362520 |
| chr_2 | g7127 | g7127.t1 | exon | g7127.t1.exon2 | 21362581 | 21363199 |
| chr_2 | g7127 | g7127.t1 | cds | g7127.t1.CDS2 | 21362581 | 21363199 |
| chr_2 | g7127 | g7127.t1 | exon | g7127.t1.exon3 | 21363256 | 21363580 |
| chr_2 | g7127 | g7127.t1 | cds | g7127.t1.CDS3 | 21363256 | 21363580 |
| chr_2 | g7127 | g7127.t1 | TSS | g7127.t1 | NA | NA |
| chr_2 | g7127 | g7127.t1 | TTS | g7127.t1 | NA | NA |
Sequences
>g7127.t1 Gene=g7127 Length=1521
ATGCAATCTAAAATTTTTAAAAGTTATGAAAAATCAATTCATTTTTTAAATGAAGCAAAA
GAGTTGAAAACACAACTGAAACATATGGATGCAATTATTGCATTAAATAAAAGTCTTTGC
TATTCCGTGTCTGATAGTCAACTTTCTATGGCATTTGCTGAACGTGCTAAAATTTTCTAT
GATTTAAAAAAATATAAAGAGTGCCAAGAAAATTTAAAATGGGCAAAATCACATGGAAAT
AATAATACTGAATTAGCACACTTTGAAACTGCTTGCATAAATCAATTAAAATCTTTGGAT
ATAAATGAAAATGATAAACCCTGGAATTTTTTCAAACTATCTCCACCTTTGAATAAAAAA
TTACCATTCATATCTGATTGTTTAAAATTGCATGAAAGTTTTAAATATGGTAGGTATATT
AAAACAAATAGACCATTGCACACCGGTGAAGTTATAGCCATCGAAGAACCTTTATTTAAA
ATGCCCAATAAAGATGTTCGCTATAAACGTTGTTCAAATTGTTTAAAATCTAATCAAATG
AATTTATTGCCGTGTTCTCAGCAAAAATGTGTGAGCACAATGTACTGCTCAATTGAATGT
ATGCAACTTGGATGGAAACGATATCATAAATATGAATGTAGCTTTCTCGAAGAGTCCTTA
GAAAATAACGAATACGATTTAATGATTCAAAGGATAATTTTTGAGACTCTTGATATGTTT
GATGGAAATATTGAAAAATTGAAGACATTATTAAGTGAAACTAAGGACAATCAATCGATT
TATGATTTTGATCTAAGCAACAAAAATGACATTGAAAATAAAAAATTACGATTAAAATCA
ATATATGCATTAAAAAGAGGAAAGTGTTCAGAAGAGGATAAAGCAATGGCTGATTGGTTT
GTTGAAAGTGACTCAACACTTAAACATTTATGTAAAACAAAAGCACAACAAGATTTTCTT
AAGAATTTCATATTAAGAATGATGGGTATTATGGATAGAAACTCTTACATATTTTACTCA
CTTGCTTCTGTATTCTCGGAAAAAGATGAAGAAATTGGCACCGGCTTATTTTCTTTTGCT
AGTCTGTTAAATCATTCATGTTCACCAAATCTTTATAGATTTTTTGTAGATAATAAACAA
ATATATGTGGTGAAAAAACCTATAGAAGCAGGACAGCAATTATTTGTGGGTTACCTATCA
AATTTTACTTTATGTGAGCGAGAAAAACGTCAAGCAGATTTATTTCAAGACTTTTCTTTT
CACTGTACATGTGACGCATGTGTTCAAAATTTTCCTTTAATGAAAGACCTCAAAAGATGT
GATGAAAATTTCAAAGAGGAGCTTCCAACGCTCTCTCGTTATTCTATTTCAGATGCCAAA
AAAATTTATGAATATAATTGCAAATATATTGAGACAAATATTAACAAATTTCCTTTTCCA
TGTTATGAAATCTGCTTTTTAATGCAATCTTCTTTTAGACTTTTACATTTCATAGCTAAT
AAACCGTTTCTTCCTGAATAA
>g7127.t1 Gene=g7127 Length=506
MQSKIFKSYEKSIHFLNEAKELKTQLKHMDAIIALNKSLCYSVSDSQLSMAFAERAKIFY
DLKKYKECQENLKWAKSHGNNNTELAHFETACINQLKSLDINENDKPWNFFKLSPPLNKK
LPFISDCLKLHESFKYGRYIKTNRPLHTGEVIAIEEPLFKMPNKDVRYKRCSNCLKSNQM
NLLPCSQQKCVSTMYCSIECMQLGWKRYHKYECSFLEESLENNEYDLMIQRIIFETLDMF
DGNIEKLKTLLSETKDNQSIYDFDLSNKNDIENKKLRLKSIYALKRGKCSEEDKAMADWF
VESDSTLKHLCKTKAQQDFLKNFILRMMGIMDRNSYIFYSLASVFSEKDEEIGTGLFSFA
SLLNHSCSPNLYRFFVDNKQIYVVKKPIEAGQQLFVGYLSNFTLCEREKRQADLFQDFSF
HCTCDACVQNFPLMKDLKRCDENFKEELPTLSRYSISDAKKIYEYNCKYIETNINKFPFP
CYEICFLMQSSFRLLHFIANKPFLPE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g7127.t1 | Gene3D | G3DSA:2.170.270.10 | SET domain | 139 | 427 | 0.000000 |
| 7 | g7127.t1 | Gene3D | G3DSA:3.30.60.180 | - | 170 | 222 | 0.000000 |
| 6 | g7127.t1 | Gene3D | G3DSA:3.30.70.3410 | - | 223 | 335 | 0.000000 |
| 3 | g7127.t1 | PANTHER | PTHR47111 | BCDNA.LD29892 | 24 | 475 | 0.000000 |
| 2 | g7127.t1 | Pfam | PF00856 | SET domain | 137 | 398 | 0.000000 |
| 1 | g7127.t1 | Pfam | PF01753 | MYND finger | 171 | 213 | 0.000044 |
| 10 | g7127.t1 | ProSiteProfiles | PS50280 | SET domain profile. | 126 | 399 | 10.471000 |
| 9 | g7127.t1 | ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 171 | 213 | 10.350000 |
| 4 | g7127.t1 | SUPERFAMILY | SSF82199 | SET domain | 124 | 425 | 0.000000 |
| 5 | g7127.t1 | SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 166 | 217 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K11426 ([histone H3]-lysine4/36 N-trimethyltransferase SMYD)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed