General information for g7131.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein prickle.
Parent gene
- The parent gene g7131 is located on chr_2: 21381539..21392331 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7131 | g7131.t1 | isoform | g7131.t1 | 21381539 | 21392331 |
| chr_2 | g7131 | g7131.t1 | exon | g7131.t1.exon1 | 21381539 | 21381753 |
| chr_2 | g7131 | g7131.t1 | cds | g7131.t1.CDS1 | 21381539 | 21381753 |
| chr_2 | g7131 | g7131.t1 | exon | g7131.t1.exon2 | 21384044 | 21384494 |
| chr_2 | g7131 | g7131.t1 | cds | g7131.t1.CDS2 | 21384044 | 21384494 |
| chr_2 | g7131 | g7131.t1 | exon | g7131.t1.exon3 | 21387384 | 21387497 |
| chr_2 | g7131 | g7131.t1 | cds | g7131.t1.CDS3 | 21387384 | 21387497 |
| chr_2 | g7131 | g7131.t1 | exon | g7131.t1.exon4 | 21388026 | 21388154 |
| chr_2 | g7131 | g7131.t1 | cds | g7131.t1.CDS4 | 21388026 | 21388154 |
| chr_2 | g7131 | g7131.t1 | exon | g7131.t1.exon5 | 21391845 | 21392048 |
| chr_2 | g7131 | g7131.t1 | cds | g7131.t1.CDS5 | 21391845 | 21392048 |
| chr_2 | g7131 | g7131.t1 | exon | g7131.t1.exon6 | 21392140 | 21392331 |
| chr_2 | g7131 | g7131.t1 | cds | g7131.t1.CDS6 | 21392140 | 21392331 |
| chr_2 | g7131 | g7131.t1 | TSS | g7131.t1 | NA | NA |
| chr_2 | g7131 | g7131.t1 | TTS | g7131.t1 | NA | NA |
Sequences
>g7131.t1 Gene=g7131 Length=1305
ATGATTATAACACAACGTGATTCAGTACCAAAAACAGCAAATTTGCTTGCTTGCAAGCAG
TGGTGGAAAGTGTGCTTTTTGAATGGTAGTCAAGAAAATTATTATAAGCAAGTCTATGGG
CATGCTGCAGCACAAAGAGTCAAAAAATCATTCACAAGTAGTAGCAGCATCAATGATAGT
GAACAAAAAGTTATTTCAGTCAATGATAATGAAATACCAATCATTCGTTCAATTTCAATG
TCCACTTATCAGCACATACCATCATCGACAAATTTTAATGAATTCGCAACGACGTCGCCA
TTACGACAGACTCCGCATAATATAAATTTACCTTGCTCATCAAAATATTTACCATTAGTG
CAGCAGCAGCAACAACAAACAATGAGCAATCAAGTTAATTCGCAGACTCTAACGTTTGCG
AGTAATACAGCAGCGACTGCAATGGCACATAGTAGTAATCTATTGAGTCAACAAACGAGT
GCATCAACAAATGTGCCCACACATCAAACACTTCCACAAAACTTCCATCCAAGTCAATTA
CATGGACATCCAGCCATAATAGGAGGCTATCATTTAGACAATCAAAGGCAATCGCAGTCT
GATGATGATAGCGGTTGTGCATTAGAAGAATATACTTGGATTCCAACTGGTCTACGACCA
GAACAGGTTCATTTGTATTTCTCGACAATCCCTGAAGATAAAGTGCCGTACGTGAATAGC
GTTGGCGAACGATATCGAGTTAAACAACTCTTACAGCAACTGCCGCCTCATGATTCAGAG
GTTCGTTACTGCCATTCACTATCGGATGAGGAACGCAAAGAGTTGCGATTATTTTCTGCA
CAAAGAAAGCGCGAAGCATTGGGACGTGGCTCTGTGAAACAAATTCAGGCCAATCATCAA
TGTGAAGGATGCGGTGATGTGATGATGACAGGTGATATCGCAGTGTATGCATCTCGTTTT
GGCCCCAATATATGCTGGCATCCATCATGTTTTATTTGTTGTATTTGCAAAGAGCTCCTC
GTTGATTTGATTTATTTTCATCGTGAGGGACGACTCTATTGTGGCCGCCATCATGCTGAA
ACATTGAAACCACGTTGTGCCGCATGTGATGAAATAATTTTGGCGGATGAATGCACGGAG
GCTGAGGGTCGTGCATGGCATATGAAGCACTTTGCGTGTTTTGATTGCGATAAGCAGTTG
GGCGGTCAGCGTTATATCATGCGAGAAGGAAAACCTTATTGTCTTGGATGCTTCGATAAT
ATTTTGCCGAGTATTGCGATTATTGTGGTGAGACAATCGGTGTAG
>g7131.t1 Gene=g7131 Length=434
MIITQRDSVPKTANLLACKQWWKVCFLNGSQENYYKQVYGHAAAQRVKKSFTSSSSINDS
EQKVISVNDNEIPIIRSISMSTYQHIPSSTNFNEFATTSPLRQTPHNINLPCSSKYLPLV
QQQQQQTMSNQVNSQTLTFASNTAATAMAHSSNLLSQQTSASTNVPTHQTLPQNFHPSQL
HGHPAIIGGYHLDNQRQSQSDDDSGCALEEYTWIPTGLRPEQVHLYFSTIPEDKVPYVNS
VGERYRVKQLLQQLPPHDSEVRYCHSLSDEERKELRLFSAQRKREALGRGSVKQIQANHQ
CEGCGDVMMTGDIAVYASRFGPNICWHPSCFICCICKELLVDLIYFHREGRLYCGRHHAE
TLKPRCAACDEIILADECTEAEGRAWHMKHFACFDCDKQLGGQRYIMREGKPYCLGCFDN
ILPSIAIIVVRQSV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g7131.t1 | CDD | cd09827 | PET_Prickle | 200 | 295 | 2.6583E-69 |
| 12 | g7131.t1 | CDD | cd09415 | LIM1_Prickle | 301 | 359 | 4.59458E-36 |
| 10 | g7131.t1 | CDD | cd09418 | LIM2_Prickle | 364 | 419 | 1.40391E-36 |
| 9 | g7131.t1 | Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 287 | 362 | 1.2E-13 |
| 8 | g7131.t1 | Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 363 | 420 | 2.3E-18 |
| 4 | g7131.t1 | PANTHER | PTHR24211:SF20 | PROTEIN ESPINAS-RELATED | 121 | 421 | 7.4E-153 |
| 5 | g7131.t1 | PANTHER | PTHR24211 | LIM DOMAIN-CONTAINING PROTEIN | 121 | 421 | 7.4E-153 |
| 1 | g7131.t1 | Pfam | PF06297 | PET Domain | 209 | 293 | 3.1E-36 |
| 3 | g7131.t1 | Pfam | PF00412 | LIM domain | 301 | 360 | 4.3E-9 |
| 2 | g7131.t1 | Pfam | PF00412 | LIM domain | 366 | 418 | 5.4E-13 |
| 13 | g7131.t1 | ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 366 | 400 | - |
| 16 | g7131.t1 | ProSiteProfiles | PS51303 | PET domain profile. | 192 | 300 | 35.757 |
| 17 | g7131.t1 | ProSiteProfiles | PS50023 | LIM domain profile. | 299 | 363 | 9.544 |
| 18 | g7131.t1 | ProSiteProfiles | PS50023 | LIM domain profile. | 364 | 424 | 13.177 |
| 15 | g7131.t1 | SMART | SM00132 | lim_4 | 300 | 357 | 1.2E-8 |
| 14 | g7131.t1 | SMART | SM00132 | lim_4 | 365 | 417 | 7.7E-18 |
| 6 | g7131.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 333 | 397 | 3.06E-14 |
| 7 | g7131.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 393 | 421 | 4.49E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K04511 (prickle)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed