General information for g7132.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein espinas.
Parent gene
- The parent gene g7132 is located on chr_2: 21392343..21393896 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7132 | g7132.t1 | isoform | g7132.t1 | 21392343 | 21393896 |
| chr_2 | g7132 | g7132.t1 | exon | g7132.t1.exon1 | 21392343 | 21393318 |
| chr_2 | g7132 | g7132.t1 | cds | g7132.t1.CDS1 | 21392343 | 21393318 |
| chr_2 | g7132 | g7132.t1 | exon | g7132.t1.exon2 | 21393388 | 21393896 |
| chr_2 | g7132 | g7132.t1 | cds | g7132.t1.CDS2 | 21393388 | 21393896 |
| chr_2 | g7132 | g7132.t1 | TTS | g7132.t1 | 21393984 | 21393984 |
| chr_2 | g7132 | g7132.t1 | TSS | g7132.t1 | NA | NA |
Sequences
>g7132.t1 Gene=g7132 Length=1485
ATGAGTCACGATGGTCAACACTGGCATGCGACAGACCAATGCTTTTCATGTTCAACGTGT
CGATGTTCACTGTTGGGTCGTCCATTTTTACCTCGTCGTGGTTCGATTTATTGCTCAATT
GCGTGTAGCAAAGGTGAACCTCCAACGCCAACTGACAGCTCTGTTCCTTCTACTGCTCGA
CCATTACTCAAATCAACACCTTCACAACAGATGCAACAATCAATGTCAACAAATCAGGGA
TCAGATAATGATGAATCAATTGCTGCTCAATCAACACCTCCAACATCACCAAAGCTTACA
ACACCTTCATCACCCATAAACAACAATCAACAACTTCAATTTGTGCAGCATCAAATGACT
AGAGCTCATCAAGTGCAAGTGCAACAGCAGCCAACAAGATCACCAAAAATGGGACGAAGA
GCTCTACATTGTAGTTCAAAGCAAGGACAAGTGAACAACAGTGGCAGTCAAACTCCATCA
CCATATTTGGCAACTAAATTTGAGCAACAGCCGCAACAACAACAAATGGATACTGTCATA
ACAATAAATGAACATGATCAACATTCATTAACATCACAAACATCTTCGAATTATAACAAA
GCACTTGATCGAGTCATTCTTGAACGAAATATTGAGAAATTACTTGAAAGAAATGACAAT
AACTCACCAGCATCATCACCTATTCATATACCAGAGAATATTACACGTAGTCCTCAAATT
AATCGATTACTGCATCAAGACAGAAGTCGTCAACCACTCGACCTCACTGATTTGGGCTTA
AGTTTAGATAATTTATCGCCAAAGACAAAAAATACAAAAGTTCCACAAGATTTGATGGTG
ACTTCATCTATGCCTGAATTGCCAATGTATGAATTGAATAGACTCGATGACATAACACCA
ATTAATGAAGAACTTCCGACACCAAATATTTCAGAGCTGACACTCAATAAAGAACCAGAA
ATACCTCCGCCAATAGCTATACCAACAACATCAAAGAAAGAAGTGCGGTTTGAAGGCGAT
TTTCAAGACACATTGCCGAGATCACGAAGTTACTCAGGAAAAACATCTTCATCATCAGCA
AGAAGTAGTGGTCGAAGACGTAAAGGAAGTCGCCAAAGGAGGCATGCAAGAGAAGAGCAT
AGAAGATTAAGACACAATCGTCACTCATCTTCCGCAACTGATGAACCATCAACGTCTAAT
CAAGCAAGATTGAGACAAGATGCAGTTGATTCACATCGTAGAATGGCAAATGATGATGAT
GACGATGATACAGAAACAACAGAAAGAAGTCTTTGCTCAACATGCTCATCGAGTTCTAGT
GATTCTGATGATTTTGCCTATGAATTACCACAACGACAAGTATATGGTGGAGTAAGAGTG
AATTACGTGCCAAACGATGCAGTTGCATGTGCCCGCAAGGAACAACAATCAATGAGAAGC
GATCAATCGAGTGGAGAACGTGATAAGAATTGCACAATATCATGA
>g7132.t1 Gene=g7132 Length=494
MSHDGQHWHATDQCFSCSTCRCSLLGRPFLPRRGSIYCSIACSKGEPPTPTDSSVPSTAR
PLLKSTPSQQMQQSMSTNQGSDNDESIAAQSTPPTSPKLTTPSSPINNNQQLQFVQHQMT
RAHQVQVQQQPTRSPKMGRRALHCSSKQGQVNNSGSQTPSPYLATKFEQQPQQQQMDTVI
TINEHDQHSLTSQTSSNYNKALDRVILERNIEKLLERNDNNSPASSPIHIPENITRSPQI
NRLLHQDRSRQPLDLTDLGLSLDNLSPKTKNTKVPQDLMVTSSMPELPMYELNRLDDITP
INEELPTPNISELTLNKEPEIPPPIAIPTTSKKEVRFEGDFQDTLPRSRSYSGKTSSSSA
RSSGRRRKGSRQRRHAREEHRRLRHNRHSSSATDEPSTSNQARLRQDAVDSHRRMANDDD
DDDTETTERSLCSTCSSSSSDSDDFAYELPQRQVYGGVRVNYVPNDAVACARKEQQSMRS
DQSSGERDKNCTIS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g7132.t1 | Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 1 | 55 | 6.7E-11 |
| 6 | g7132.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 102 | - |
| 4 | g7132.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 135 | - |
| 10 | g7132.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 157 | - |
| 5 | g7132.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 445 | - |
| 8 | g7132.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 363 | - |
| 3 | g7132.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 387 | - |
| 11 | g7132.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 420 | - |
| 7 | g7132.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 445 | - |
| 9 | g7132.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 494 | - |
| 1 | g7132.t1 | PANTHER | PTHR24211:SF20 | PROTEIN ESPINAS-RELATED | 1 | 494 | 3.1E-50 |
| 2 | g7132.t1 | PANTHER | PTHR24211 | LIM DOMAIN-CONTAINING PROTEIN | 1 | 494 | 3.1E-50 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed