Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7133 g7133.t1 TTS g7133.t1 21396152 21396152
chr_2 g7133 g7133.t1 isoform g7133.t1 21396282 21397502
chr_2 g7133 g7133.t1 exon g7133.t1.exon1 21396282 21396799
chr_2 g7133 g7133.t1 cds g7133.t1.CDS1 21396282 21396799
chr_2 g7133 g7133.t1 exon g7133.t1.exon2 21396863 21397502
chr_2 g7133 g7133.t1 cds g7133.t1.CDS2 21396863 21397502
chr_2 g7133 g7133.t1 TSS g7133.t1 NA NA

Sequences

>g7133.t1 Gene=g7133 Length=1158
ATGGGACGAAGAGCTCTACATTGTAGTTCAAAGCAAGGACAAATGATGAGCAACAGTGGC
AGTCAAACTCCATCACCATATATGGCAACTAAATTTGAGCAACAGCCGCAACAACAACAA
ATGGATACTGTCATAACAATAAATGAACATGATCAACATTCACTAACATCACAAACATCT
TCAAATTATAACAAAGCACTTGATCGAGTCATTCTTGAACGAAATATTGAGAAATTACTT
GAAAGAAATGACAATAACTCACCAGCATCATCACCTATTCATATACCAGAGAATATTACA
CGTAGTCCTCAAATTAATCGATTACTGCATCAAGACAGAAGTCGTCAACCACTCGACCTC
ACTGATTTGGGTTTAAGCTTAGATAATTTATCGTCAAAATGCAATAATATTAGTACAAAA
GAAAATGAACCTGATGTAACAGCAATAACAACATCGAAAGCCACAACAATGAAAACTCAA
TCAATCGCGGAAGTCGATAAAGTTACGAAAGATAAAAGTAAGAAAATCGAAACTGATGAT
GACGATGACGATGAAAGAGAAGAGGAAGTAAAGTTTGCGAAACCAATTGAAAAAAGCAAT
TCAAAGCATGCAGTCGTTCCGGAGCCATCGCAACCAATAACACTGCCAACAACGTGCAAA
AAAGAGGTTCGTTTTGATGGTGAAAAGGATTCAAAGCAACACCCACATCGATCAAGAACA
CACTCAGGAAGATTAACAAGAAGCAGCGGTCGAAGGCGTAAAGGAAGTCGTCAACGGAAG
CATGTTTCCGATTCATCAAACAATTCAAAGTACAAGCATGAAAGCGGTCAAAACGGTCAT
CATCATAGAAAATCTTCATCAAGAATTAATAGCAAACATAATAATGAGCCATGTACTTCA
GCACAAGCTAGAATGAGGGACAATCATTTACATGAATCAGAAACCAGCAGTCTTTGTTCA
ACTTGTTCATCTAGCTCTAGTGATTCGGATGATTTCGCCTATAAATTGCCTCAGAGGAAA
ATTTATGGTGGTGTTAGAATAAGCTATGTACCTAATGACGCACTCGCGTGCGCTCGCAAA
GAGCAACAAAAGAAACAATCGGCACCTCAAAACACCAGCGGCAATAAAAAGTTTTTAGCG
TTATTTAATTTTCTTTAA

>g7133.t1 Gene=g7133 Length=385
MGRRALHCSSKQGQMMSNSGSQTPSPYMATKFEQQPQQQQMDTVITINEHDQHSLTSQTS
SNYNKALDRVILERNIEKLLERNDNNSPASSPIHIPENITRSPQINRLLHQDRSRQPLDL
TDLGLSLDNLSSKCNNISTKENEPDVTAITTSKATTMKTQSIAEVDKVTKDKSKKIETDD
DDDDEREEEVKFAKPIEKSNSKHAVVPEPSQPITLPTTCKKEVRFDGEKDSKQHPHRSRT
HSGRLTRSSGRRRKGSRQRKHVSDSSNNSKYKHESGQNGHHHRKSSSRINSKHNNEPCTS
AQARMRDNHLHESETSSLCSTCSSSSSDSDDFAYKLPQRKIYGGVRISYVPNDALACARK
EQQKKQSAPQNTSGNKKFLALFNFL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7133.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 25 -
6 g7133.t1 MobiDBLite mobidb-lite consensus disorder prediction 10 25 -
3 g7133.t1 MobiDBLite mobidb-lite consensus disorder prediction 167 330 -
4 g7133.t1 MobiDBLite mobidb-lite consensus disorder prediction 221 235 -
8 g7133.t1 MobiDBLite mobidb-lite consensus disorder prediction 236 259 -
5 g7133.t1 MobiDBLite mobidb-lite consensus disorder prediction 314 330 -
1 g7133.t1 PANTHER PTHR24211:SF20 PROTEIN ESPINAS-RELATED 6 374 2.3E-13
2 g7133.t1 PANTHER PTHR24211 LIM DOMAIN-CONTAINING PROTEIN 6 374 2.3E-13

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed