Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Zinc metalloproteinase nas-8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7134 g7134.t3 TTS g7134.t3 21408943 21408943
chr_2 g7134 g7134.t3 isoform g7134.t3 21409165 21410083
chr_2 g7134 g7134.t3 exon g7134.t3.exon1 21409165 21409696
chr_2 g7134 g7134.t3 cds g7134.t3.CDS1 21409167 21409696
chr_2 g7134 g7134.t3 exon g7134.t3.exon2 21409787 21409929
chr_2 g7134 g7134.t3 cds g7134.t3.CDS2 21409787 21409802
chr_2 g7134 g7134.t3 exon g7134.t3.exon3 21409993 21410083
chr_2 g7134 g7134.t3 TSS g7134.t3 21410110 21410110

Sequences

>g7134.t3 Gene=g7134 Length=766
ATGAAATCAATTTTTGTGGTGGTAGTTTTTATAACAGTTTCAACAGCAAATCCATGGCGA
GGTCTAGAGAGACCTCTGAATCAGCAGCAGATTGAGAGGCTGAGAAATATCGATGTGAAT
GTGAATGCAGAAGAGTTAAGCGGACAAGTCGAGGGTGATATGCTTATTTATTCACACGAG
TATTCATCGTTTAATGGCCGTATAGAAGCGAGTAGACGATGGCCAAACAATACTATGACA
ACCACATTCGGTATATTCATGGTGCTGCACAATATTTGAATGAACGTACATGCATTCGAT
TTATTAATCGCACTACAGAAATTGATCACGTTTTCATAACTGGCGATTCAATTGGCTGTG
CTGCGCAAGTTGGTCGTGTTGGTGGCGCTCAAAGAATTCGTTTGCAACCGCATGCCATTG
ACACTGGCTGCTTCCGCTTCTTTACAATTGTTCACGAGCTCATTCATGCTCTTGGTTTTC
ATCACATGCACAACTCTTTTGATCGTGACAGATATTTAAGAATTAATTGGCAAAATATTG
CACCAGGCAGTGAAAGTAATTTTCAAATTCGTCCATCAACACAGGTCACACATTTTGGCA
TTCCTTATGATGTTGGCAGTATCATGCACTATAGCTCAACAGCATTTAGCGGTAATGGAC
TCGATACTATGACAGCTCTATCAAACCCGCACAGTCGTGTTATGGGACAAAGAAGTGAGG
CAACGCCTGAAGATATTTTGAGAATAAATTTAATGTACAATTGCCT

>g7134.t3 Gene=g7134 Length=182
MAKQYYDNHIRYIHGAAQYLNERTCIRFINRTTEIDHVFITGDSIGCAAQVGRVGGAQRI
RLQPHAIDTGCFRFFTIVHELIHALGFHHMHNSFDRDRYLRINWQNIAPGSESNFQIRPS
TQVTHFGIPYDVGSIMHYSSTAFSGNGLDTMTALSNPHSRVMGQRSEATPEDILRINLMY
NC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g7134.t3 CDD cd04280 ZnMc_astacin_like 4 180 0.00
10 g7134.t3 Gene3D G3DSA:3.40.390.10 Collagenase (Catalytic Domain) 1 182 0.00
2 g7134.t3 PANTHER PTHR10127:SF780 ASTACIN-LIKE METALLOENDOPEPTIDASE 12 182 0.00
3 g7134.t3 PANTHER PTHR10127 DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING 12 182 0.00
6 g7134.t3 PRINTS PR00480 Astacin family signature 13 31 0.00
8 g7134.t3 PRINTS PR00480 Astacin family signature 71 89 0.00
4 g7134.t3 PRINTS PR00480 Astacin family signature 90 107 0.00
5 g7134.t3 PRINTS PR00480 Astacin family signature 129 144 0.00
7 g7134.t3 PRINTS PR00480 Astacin family signature 168 181 0.00
1 g7134.t3 Pfam PF01400 Astacin (Peptidase family M12A) 3 182 0.00
13 g7134.t3 ProSiteProfiles PS51864 Astacin-like domain profile. 1 182 62.12
12 g7134.t3 SMART SM00235 col_5 2 134 0.00
9 g7134.t3 SUPERFAMILY SSF55486 Metalloproteases (zincins), catalytic domain 7 182 0.00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008237 metallopeptidase activity MF
GO:0006508 proteolysis BP
GO:0004222 metalloendopeptidase activity MF
GO:0008270 zinc ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed