Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Zinc metalloproteinase nas-8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7134 g7134.t4 TTS g7134.t4 21408943 21408943
chr_2 g7134 g7134.t4 isoform g7134.t4 21409165 21410083
chr_2 g7134 g7134.t4 exon g7134.t4.exon1 21409165 21409696
chr_2 g7134 g7134.t4 cds g7134.t4.CDS1 21409167 21409696
chr_2 g7134 g7134.t4 exon g7134.t4.exon2 21409756 21410083
chr_2 g7134 g7134.t4 cds g7134.t4.CDS2 21409756 21409861
chr_2 g7134 g7134.t4 TSS g7134.t4 21410110 21410110

Sequences

>g7134.t4 Gene=g7134 Length=860
ATGAAATCAATTTTTGTGGTGGTAGTTTTTATAACAGTTTCAACAGCAAATCCATGGCGA
GGTCTAGAGAGACCTCTGAATCAGCAGCAGAGTAAATTAGAAATTCAAATTTTTCCTCAC
GCCAATGAAGTTAATTAATCAATTTTCGAGTTAGTTGAGAGGCTGAGAAATATCGATGTG
AATGTGAATGCAGAAGAGTTAAGCGGACAAGTCGAGGGTGATATGCTTATTTATTCACAC
GAGTATTCATCGTTTAATGGCCGTATAGAAGCGAGTAGACGATGGCCAAACAATACTGTG
CCATATGTCATTAACACGGCATTTTTCGATGACAACCACATTCGGTATATTCATGGTGCT
GCACAATATTTGAATGAACGTACATGCATTCGATTTATTAATCGCACTACAGAAATTGAT
CACGTTTTCATAACTGGCGATTCAATTGGCTGTGCTGCGCAAGTTGGTCGTGTTGGTGGC
GCTCAAAGAATTCGTTTGCAACCGCATGCCATTGACACTGGCTGCTTCCGCTTCTTTACA
ATTGTTCACGAGCTCATTCATGCTCTTGGTTTTCATCACATGCACAACTCTTTTGATCGT
GACAGATATTTAAGAATTAATTGGCAAAATATTGCACCAGGCAGTGAAAGTAATTTTCAA
ATTCGTCCATCAACACAGGTCACACATTTTGGCATTCCTTATGATGTTGGCAGTATCATG
CACTATAGCTCAACAGCATTTAGCGGTAATGGACTCGATACTATGACAGCTCTATCAAAC
CCGCACAGTCGTGTTATGGGACAAAGAAGTGAGGCAACGCCTGAAGATATTTTGAGAATA
AATTTAATGTACAATTGCCT

>g7134.t4 Gene=g7134 Length=212
MLIYSHEYSSFNGRIEASRRWPNNTVPYVINTAFFDDNHIRYIHGAAQYLNERTCIRFIN
RTTEIDHVFITGDSIGCAAQVGRVGGAQRIRLQPHAIDTGCFRFFTIVHELIHALGFHHM
HNSFDRDRYLRINWQNIAPGSESNFQIRPSTQVTHFGIPYDVGSIMHYSSTAFSGNGLDT
MTALSNPHSRVMGQRSEATPEDILRINLMYNC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g7134.t4 CDD cd04280 ZnMc_astacin_like 23 210 0.000
10 g7134.t4 Gene3D G3DSA:3.40.390.10 Collagenase (Catalytic Domain) 3 212 0.000
2 g7134.t4 PANTHER PTHR10127:SF837 METALLOENDOPEPTIDASE 8 212 0.000
3 g7134.t4 PANTHER PTHR10127 DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING 8 212 0.000
4 g7134.t4 PRINTS PR00480 Astacin family signature 43 61 0.000
8 g7134.t4 PRINTS PR00480 Astacin family signature 101 119 0.000
6 g7134.t4 PRINTS PR00480 Astacin family signature 120 137 0.000
5 g7134.t4 PRINTS PR00480 Astacin family signature 159 174 0.000
7 g7134.t4 PRINTS PR00480 Astacin family signature 198 211 0.000
1 g7134.t4 Pfam PF01400 Astacin (Peptidase family M12A) 19 212 0.000
13 g7134.t4 ProSiteProfiles PS51864 Astacin-like domain profile. 12 212 70.494
12 g7134.t4 SMART SM00235 col_5 17 164 0.000
9 g7134.t4 SUPERFAMILY SSF55486 Metalloproteases (zincins), catalytic domain 18 212 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008237 metallopeptidase activity MF
GO:0006508 proteolysis BP
GO:0004222 metalloendopeptidase activity MF
GO:0008270 zinc ion binding MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed