Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Zinc metalloproteinase nas-8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7134 g7134.t6 TTS g7134.t6 21408943 21408943
chr_2 g7134 g7134.t6 isoform g7134.t6 21409165 21410083
chr_2 g7134 g7134.t6 exon g7134.t6.exon1 21409165 21409696
chr_2 g7134 g7134.t6 cds g7134.t6.CDS1 21409167 21409696
chr_2 g7134 g7134.t6 exon g7134.t6.exon2 21409756 21409929
chr_2 g7134 g7134.t6 cds g7134.t6.CDS2 21409756 21409929
chr_2 g7134 g7134.t6 exon g7134.t6.exon3 21409993 21410083
chr_2 g7134 g7134.t6 cds g7134.t6.CDS3 21409993 21410083
chr_2 g7134 g7134.t6 TSS g7134.t6 21410110 21410110

Sequences

>g7134.t6 Gene=g7134 Length=797
ATGAAATCAATTTTTGTGGTGGTAGTTTTTATAACAGTTTCAACAGCAAATCCATGGCGA
GGTCTAGAGAGACCTCTGAATCAGCAGCAGATTGAGAGGCTGAGAAATATCGATGTGAAT
GTGAATGCAGAAGAGTTAAGCGGACAAGTCGAGGGTGATATGCTTATTTATTCACACGAG
TATTCATCGTTTAATGGCCGTATAGAAGCGAGTAGACGATGGCCAAACAATACTGTGCCA
TATGTCATTAACACGGCATTTTTCGATGACAACCACATTCGGTATATTCATGGTGCTGCA
CAATATTTGAATGAACGTACATGCATTCGATTTATTAATCGCACTACAGAAATTGATCAC
GTTTTCATAACTGGCGATTCAATTGGCTGTGCTGCGCAAGTTGGTCGTGTTGGTGGCGCT
CAAAGAATTCGTTTGCAACCGCATGCCATTGACACTGGCTGCTTCCGCTTCTTTACAATT
GTTCACGAGCTCATTCATGCTCTTGGTTTTCATCACATGCACAACTCTTTTGATCGTGAC
AGATATTTAAGAATTAATTGGCAAAATATTGCACCAGGCAGTGAAAGTAATTTTCAAATT
CGTCCATCAACACAGGTCACACATTTTGGCATTCCTTATGATGTTGGCAGTATCATGCAC
TATAGCTCAACAGCATTTAGCGGTAATGGACTCGATACTATGACAGCTCTATCAAACCCG
CACAGTCGTGTTATGGGACAAAGAAGTGAGGCAACGCCTGAAGATATTTTGAGAATAAAT
TTAATGTACAATTGCCT

>g7134.t6 Gene=g7134 Length=265
MKSIFVVVVFITVSTANPWRGLERPLNQQQIERLRNIDVNVNAEELSGQVEGDMLIYSHE
YSSFNGRIEASRRWPNNTVPYVINTAFFDDNHIRYIHGAAQYLNERTCIRFINRTTEIDH
VFITGDSIGCAAQVGRVGGAQRIRLQPHAIDTGCFRFFTIVHELIHALGFHHMHNSFDRD
RYLRINWQNIAPGSESNFQIRPSTQVTHFGIPYDVGSIMHYSSTAFSGNGLDTMTALSNP
HSRVMGQRSEATPEDILRINLMYNC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g7134.t6 CDD cd04280 ZnMc_astacin_like 76 263 1.32128E-81
11 g7134.t6 Gene3D G3DSA:3.40.390.10 Collagenase (Catalytic Domain) 27 265 5.3E-68
2 g7134.t6 PANTHER PTHR10127:SF837 METALLOENDOPEPTIDASE 29 265 1.4E-65
3 g7134.t6 PANTHER PTHR10127 DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING 29 265 1.4E-65
7 g7134.t6 PRINTS PR00480 Astacin family signature 96 114 1.6E-24
4 g7134.t6 PRINTS PR00480 Astacin family signature 154 172 1.6E-24
6 g7134.t6 PRINTS PR00480 Astacin family signature 173 190 1.6E-24
8 g7134.t6 PRINTS PR00480 Astacin family signature 212 227 1.6E-24
5 g7134.t6 PRINTS PR00480 Astacin family signature 251 264 1.6E-24
1 g7134.t6 Pfam PF01400 Astacin (Peptidase family M12A) 72 265 2.6E-53
13 g7134.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
14 g7134.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
15 g7134.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 11 -
16 g7134.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 12 16 -
12 g7134.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 265 -
19 g7134.t6 ProSiteProfiles PS51864 Astacin-like domain profile. 65 265 70.494
18 g7134.t6 SMART SM00235 col_5 70 217 2.4E-30
9 g7134.t6 SUPERFAMILY SSF55486 Metalloproteases (zincins), catalytic domain 71 265 1.79E-50
10 g7134.t6 SignalP_EUK SignalP-noTM SignalP-noTM 1 16 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008237 metallopeptidase activity MF
GO:0006508 proteolysis BP
GO:0004222 metalloendopeptidase activity MF
GO:0008270 zinc ion binding MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed