General information for g7137.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7137 is located on chr_2: 21464664..21465342 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7137 | g7137.t3 | TTS | g7137.t3 | 21463156 | 21463156 |
| chr_2 | g7137 | g7137.t3 | isoform | g7137.t3 | 21463703 | 21465342 |
| chr_2 | g7137 | g7137.t3 | exon | g7137.t3.exon1 | 21463703 | 21464225 |
| chr_2 | g7137 | g7137.t3 | cds | g7137.t3.CDS1 | 21463703 | 21464083 |
| chr_2 | g7137 | g7137.t3 | exon | g7137.t3.exon2 | 21464436 | 21465342 |
| chr_2 | g7137 | g7137.t3 | TSS | g7137.t3 | 21465532 | 21465532 |
Sequences
>g7137.t3 Gene=g7137 Length=1430
ATGGCAGGTAATTTTGCGATATATAATGACCAAGAGAATATCAAAGAAGTCAAAGCACCT
TTGCGCGCAGAAATTAAACGAGAACAAACTAAACAAATGGTTTTGCCAAATAAAACTATT
GGTGATGAAAATGCACTGCAAAACAATGTAAGGATTCAAGCATGTTTACCGCTTTATTTT
CATGTTGATTTTTACTCTTTTTTTTACAATAGTTAAAATTAAAGTCAAGCAAGACAGATA
CGGTCTCTAATCATCTTGGTGTTGCATCTCGAGCTTTCAAGGAAAGGAATATATATCCGG
TGAATAAAAATGAAAAAGAAGTTTTGAAATCTTCAGAGGAAATTTCATGTGATGAATCAA
ATGTAAGTGTCATGAGCCAGTCATGGAGTTCTTCAAGTTTTGAGGCTTCATCATCGTCTT
CTTTTACGTAAGTCTTCTATTTGTTTATAAGCTTAATATTGAATGAATATAAATTCTATA
AACACACAGTTATCGAAAGGAAAATGAGCAAGATGAACATCTTGCAACTCCAATGTCAGT
TACAACTGTTGGTACACCTATGTCTGTTGACAATAAATTTTCATTGACTGATGATCAAAG
AGATGCCATCAAAAATGATCGTGAGCGTCTTTATGAATGCGTGGAATATCAATTAGATAT
TTTAAACTATTTAAAAACAGTTGAGCTCCAGAAAAATAATCGTCCTCGCGTGGATTATAT
GAAAAAACAGCCCGATATTAATGATTCGATGCGTACAATTTTAATTGATTGGCTCGTTGA
AGTTAGCGAAGAATATCGTCTCCATAGTGAGACACTTTGTTTAGCTGTTTCATATATTGA
CCGCTTCCTCAGCTACATGTCAGTAGTTCGCGCAAAATTACAACTTGTTGGGACTACGGC
AATTCTTTTTTATCAGTCTCTTTGCTACTATTATGAATATTCCCGACAAAATTAAACATA
TGGGGCAGGTGAGTGAAAATTGTAAAAAAAATTTATATATAAATGGATTTAAAATTTATC
ATCTCTTATAGTATCTTTGTGAGCTTTCAATGTTACGTGCTACACCTTTTTTGAGCTATA
CACCTTCTCAATTGGCAGCAGCTGGTTTAGCTCTGTCATATTATACACATGGAAACTCGA
TTTGGAATAAGAAAATGCAAGAAACTTTCGGTTATGAGCTGGAAGATTTGAAACAAATTA
TTTTACACTTGAATGAGCTGCATTTTGAAGCTGAATCACTTCCACAACAGGCAATTCAAG
AGAAATTTAAAGCAAATAAATATATGCAAGTAGCTTGTGTCAAACCGAAAAAAATCACTT
TAGAAGCACTCGAAGAGATGATAACAATGGTCAATGTGGGTGATGAACTAAACACAACAG
CGGAAAATATTGAAAATGTTCGGCAAAAGACTGAAATGCTTTTCAATTAA
>g7137.t3 Gene=g7137 Length=126
MLRATPFLSYTPSQLAAAGLALSYYTHGNSIWNKKMQETFGYELEDLKQIILHLNELHFE
AESLPQQAIQEKFKANKYMQVACVKPKKITLEALEEMITMVNVGDELNTTAENIENVRQK
TEMLFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7137.t3 | Gene3D | G3DSA:1.10.472.10 | - | 1 | 96 | 0 |
| 2 | g7137.t3 | PANTHER | PTHR10177:SF254 | CYCLIN-A1 | 2 | 86 | 0 |
| 3 | g7137.t3 | PANTHER | PTHR10177 | CYCLINS | 2 | 86 | 0 |
| 1 | g7137.t3 | Pfam | PF02984 | Cyclin, C-terminal domain | 6 | 84 | 0 |
| 4 | g7137.t3 | SUPERFAMILY | SSF47954 | Cyclin-like | 4 | 87 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed