General information for g7138.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Tumor susceptibility gene 101 protein.
Parent gene
- The parent gene g7138 is located on chr_2: 21466955..21470095 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7138 | g7138.t4 | TSS | g7138.t4 | 21465600 | 21465600 |
| chr_2 | g7138 | g7138.t4 | isoform | g7138.t4 | 21466542 | 21467150 |
| chr_2 | g7138 | g7138.t4 | exon | g7138.t4.exon1 | 21466542 | 21466902 |
| chr_2 | g7138 | g7138.t4 | cds | g7138.t4.CDS1 | 21466637 | 21466902 |
| chr_2 | g7138 | g7138.t4 | exon | g7138.t4.exon2 | 21466964 | 21467150 |
| chr_2 | g7138 | g7138.t4 | cds | g7138.t4.CDS2 | 21466964 | 21467150 |
| chr_2 | g7138 | g7138.t4 | TTS | g7138.t4 | 21467312 | 21467312 |
Sequences
>g7138.t4 Gene=g7138 Length=548
CAACACAGAGTAATAATAGTGCAGCATCATCAGGCACAGGAACAATTACTGAAGAACACA
TTAAATTGTCACTTATTTCTGCTGTTGAAGACAAAATGAGACGTCGAATTCAAGAAAAAG
TCAATCAATATCAAGCAGAAATACAGACATTAAAGCGAACAAAGCAAGAACTCGTTGAAG
GTCAAAATAAATTGTCAGAAATCATTAATAAATTGGAACGCGATGAAACAGAACTGAAGA
AAAATATTCAATTATTGCACGATAAAGATGTTGAGTTAGCAAAATCTTTAGAGCAACTAG
AACAGAACGATGAAATTGATGTAGACGAAGCTGTAACCACAACAGCTCCTCTTTATAAAC
AATTAATCAACGCTTATGCTGAAGAAGCTGCTATTGAAGATGCCATTTATTATTTGGGCG
AAGCTCTGCGAAAGGGAGTTATCGATTTGGAAGTATTTTTAAAGCAAGTTAGACAGCTCG
CTCGAAAGCAGTTTATGAATCGTGCTCTCATGCAAAAATGCAGACAAAAGGCTGGACTGG
CTGGTTAA
>g7138.t4 Gene=g7138 Length=150
MRRRIQEKVNQYQAEIQTLKRTKQELVEGQNKLSEIINKLERDETELKKNIQLLHDKDVE
LAKSLEQLEQNDEIDVDEAVTTTAPLYKQLINAYAEEAAIEDAIYYLGEALRKGVIDLEV
FLKQVRQLARKQFMNRALMQKCRQKAGLAG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7138.t4 | Coils | Coil | Coil | 2 | 57 | - |
| 2 | g7138.t4 | PANTHER | PTHR23306 | TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED | 1 | 149 | 9.2E-43 |
| 3 | g7138.t4 | PANTHER | PTHR23306:SF17 | TUMOR SUSCEPTIBILITY GENE 101 PROTEIN | 1 | 149 | 9.2E-43 |
| 1 | g7138.t4 | Pfam | PF09454 | Vps23 core domain | 78 | 141 | 2.9E-29 |
| 6 | g7138.t4 | ProSiteProfiles | PS51312 | Steadiness box (SB) domain profile. | 84 | 150 | 14.507 |
| 4 | g7138.t4 | SUPERFAMILY | SSF140111 | Endosomal sorting complex assembly domain | 85 | 145 | 9.15E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
