General information for g714.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Elongation factor 1-gamma.
Parent gene
- The parent gene g714 is located on chr_3: 5473182..5479543 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g714 | g714.t10 | TTS | g714.t10 | 5471464 | 5471464 |
| chr_3 | g714 | g714.t10 | isoform | g714.t10 | 5471712 | 5473196 |
| chr_3 | g714 | g714.t10 | exon | g714.t10.exon1 | 5471712 | 5471771 |
| chr_3 | g714 | g714.t10 | cds | g714.t10.CDS1 | 5471755 | 5471771 |
| chr_3 | g714 | g714.t10 | exon | g714.t10.exon2 | 5471834 | 5472860 |
| chr_3 | g714 | g714.t10 | cds | g714.t10.CDS2 | 5471834 | 5472860 |
| chr_3 | g714 | g714.t10 | exon | g714.t10.exon3 | 5473044 | 5473196 |
| chr_3 | g714 | g714.t10 | cds | g714.t10.CDS3 | 5473044 | 5473196 |
| chr_3 | g714 | g714.t10 | TSS | g714.t10 | 5473488 | 5473488 |
Sequences
>g714.t10 Gene=g714 Length=1240
ATGTTGCTCTACACGTATCCAGAAAATTTCCGTGCTTATAAAGCTCTCATTGCGGCTCAA
TACTCGGGAGCTAAAGTTGATATTGCCCCAAATTTCGTTTTTGGTGAAACAAACCGTACT
GAATCCTTCTTAAAGAAATTTCCTCTTGGAAAAGTGCCAGCATTAGAAACTGATGACGGT
AAATATTTAGCTGAATCAAATGCAATTGCATACTACGTCTCAAATGCTCAATTACGCGGT
GCAAGTGATTTTGAGAAAGCGGAAGTTCTTCAATGGTTGAGTTTTGCCGATAATGAAATT
GGACCAGCTGCAGCAGCATGGGTCTATCCAGCTTTGGGCTACATCCAATTCAACAAGCTA
TCACATGAACGTGCAAAGCAAGATATTGCTCGTTCACTCGAAAGATTGCAAGCTCGTCTC
GTAAATAATACTTATCTTGTCGGCGAACGCATCACACTTGCCGATATTGTTGTTTTCACT
AGCCTCCTTTCATTATTCCAACACGTTGCTGATCCAGCATATCGCAAGCCATTCTTTGCT
GTCAATCGTTGGTTCAATACAATTCTCAATCAGCCACAAACAAAAGCAGTTGTTAAGAAT
TTCACTTTCTGTGAAAAAGAAACACCATTCGATCCTAAGAAATATGCCGAATTCCAAGCC
AAATTTGGCGGTGGTGCTCAACAAAAGGAAAAGAAGGAAAAAGAAAAGAAAGAGAAACAA
CCACAACAACCAGCAGCTGAGAAGAAAAAGAAGGAGAAAGAAGCAGAACCTGCTGAAGAG
ATGGATGAAGCAGAATTGGCACTTGCTGCTGAACCAAAATCAAAAGATCCATTTGATTCT
CTCCCAAAAGGCACATTCAATATGGACGACTTCAAGCGTGTATACAGTAATGAAGATGAA
GCAAAATCAATTCCATATTTCTTCGAGAAATTCGATCCAGAAAATTACTCAATTTGGTAT
GGTGAATATAAATATCCAGAAGAATTGACTAAGGTATTTATGAGCTGCAATTTAATCACC
GGTATGTTCCAACGTCTTGATAAAATGAGAAAACAAGCATTTGCCTCATGCTGCCTCTTC
GGTGAAGACAATAATAGCACAATTTCTGGTGTCTGGGTATGGCGTGGACAAGAGCTTGCA
TTTGGACTTTCACCAGATTGGCAAATCGATTACGAGAGCTTCATGGACTGGAACTGACAA
AGGAGGCCGCAAATTCAATCAAGGCAAAATTTTCAAATAA
>g714.t10 Gene=g714 Length=398
MLLYTYPENFRAYKALIAAQYSGAKVDIAPNFVFGETNRTESFLKKFPLGKVPALETDDG
KYLAESNAIAYYVSNAQLRGASDFEKAEVLQWLSFADNEIGPAAAAWVYPALGYIQFNKL
SHERAKQDIARSLERLQARLVNNTYLVGERITLADIVVFTSLLSLFQHVADPAYRKPFFA
VNRWFNTILNQPQTKAVVKNFTFCEKETPFDPKKYAEFQAKFGGGAQQKEKKEKEKKEKQ
PQQPAAEKKKKEKEAEPAEEMDEAELALAAEPKSKDPFDSLPKGTFNMDDFKRVYSNEDE
AKSIPYFFEKFDPENYSIWYGEYKYPEELTKVFMSCNLITGMFQRLDKMRKQAFASCCLF
GEDNNSTISGVWVWRGQELAFGLSPDWQIDYESFMDWN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g714.t10 | CDD | cd03044 | GST_N_EF1Bgamma | 3 | 75 | 1.2382E-30 |
| 12 | g714.t10 | CDD | cd03181 | GST_C_EF1Bgamma_like | 85 | 207 | 2.4243E-61 |
| 11 | g714.t10 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 73 | 6.0E-25 |
| 9 | g714.t10 | Gene3D | G3DSA:1.20.1050.10 | - | 75 | 212 | 9.1E-48 |
| 10 | g714.t10 | Gene3D | G3DSA:3.30.70.1010 | - | 274 | 398 | 2.5E-58 |
| 15 | g714.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 263 | - |
| 16 | g714.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 257 | - |
| 4 | g714.t10 | PANTHER | PTHR43986:SF1 | ELONGATION FACTOR 1-GAMMA | 2 | 397 | 5.1E-155 |
| 5 | g714.t10 | PANTHER | PTHR43986 | ELONGATION FACTOR 1-GAMMA | 2 | 397 | 5.1E-155 |
| 3 | g714.t10 | Pfam | PF02798 | Glutathione S-transferase, N-terminal domain | 3 | 74 | 1.8E-17 |
| 2 | g714.t10 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 108 | 192 | 1.7E-13 |
| 1 | g714.t10 | Pfam | PF00647 | Elongation factor 1 gamma, conserved domain | 273 | 378 | 2.8E-48 |
| 18 | g714.t10 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 81 | 18.084 |
| 17 | g714.t10 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 82 | 210 | 23.448 |
| 19 | g714.t10 | ProSiteProfiles | PS50040 | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 274 | 398 | 64.656 |
| 20 | g714.t10 | SFLD | SFLDG00358 | Main (cytGST) | 3 | 188 | 6.3E-29 |
| 21 | g714.t10 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 3 | 188 | 6.3E-29 |
| 14 | g714.t10 | SMART | SM01183 | EF1G_2 | 273 | 378 | 1.3E-76 |
| 7 | g714.t10 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 1 | 75 | 1.51E-15 |
| 8 | g714.t10 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 75 | 205 | 4.18E-31 |
| 6 | g714.t10 | SUPERFAMILY | SSF89942 | eEF1-gamma domain | 274 | 394 | 8.24E-55 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
| GO:0003746 | translation elongation factor activity | MF |
| GO:0006414 | translational elongation | BP |
KEGG
Orthology
- This transcript has been annotated with K03233 (elongation factor 1-gamma)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
