General information for g714.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Elongation factor 1-gamma.
Parent gene
- The parent gene g714 is located on chr_3: 5473182..5479543 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g714 | g714.t12 | TTS | g714.t12 | 5471464 | 5471464 |
| chr_3 | g714 | g714.t12 | isoform | g714.t12 | 5471712 | 5473208 |
| chr_3 | g714 | g714.t12 | exon | g714.t12.exon1 | 5471712 | 5472310 |
| chr_3 | g714 | g714.t12 | cds | g714.t12.CDS1 | 5472026 | 5472310 |
| chr_3 | g714 | g714.t12 | exon | g714.t12.exon2 | 5472423 | 5472860 |
| chr_3 | g714 | g714.t12 | cds | g714.t12.CDS2 | 5472423 | 5472860 |
| chr_3 | g714 | g714.t12 | exon | g714.t12.exon3 | 5473044 | 5473208 |
| chr_3 | g714 | g714.t12 | cds | g714.t12.CDS3 | 5473044 | 5473196 |
| chr_3 | g714 | g714.t12 | TSS | g714.t12 | 5473488 | 5473488 |
Sequences
>g714.t12 Gene=g714 Length=1202
AGATAAATCAACATGTTGCTCTACACGTATCCAGAAAATTTCCGTGCTTATAAAGCTCTC
ATTGCGGCTCAATACTCGGGAGCTAAAGTTGATATTGCCCCAAATTTCGTTTTTGGTGAA
ACAAACCGTACTGAATCCTTCTTAAAGAAATTTCCTCTTGGAAAAGTGCCAGCATTAGAA
ACTGATGACGGTAAATATTTAGCTGAATCAAATGCAATTGCATACTACGTCTCAAATGCT
CAATTACGCGGTGCAAGTGATTTTGAGAAAGCGGAAGTTCTTCAATGGTTGAGTTTTGCC
GATAATGAAATTGGACCAGCTGCAGCAGCATGGGTCTATCCAGCTTTGGGCTACATCCAA
TTCAACAAGCTATCACATGAACGTGCAAAGCAAGATATTGCTCGTTCACTCGAAAGATTG
CAAGCTCGTCTCGTAAATAATACTTATCTTGTCGGCGAACGCATCACACTTGCCGATATT
GTTGTTTTCACTAGCCTCCTTTCATTATTCCAACACGTTGCTGATCCAGCATATCGCAAG
CCATTCTTTGCTGTCAATCGTTGGTTCAATACAATTCTCAATCAGCCACAAACAAAAGCA
GTTAAAAGAAAGAGAAACAACCACAACAACCAGCAGCTGAGAAGAAAAAGAAGGAGAAAG
AAGCAGAACCTGCTGAAGAGATGGATGAAGCAGAATTGGCACTTGCTGCTGAACCAAAAT
CAAAAGATCCATTTGATTCTCTCCCAAAAGGCACATTCAATATGGACGACTTCAAGCGTG
TATACAGTAATGAAGATGAAGCAAAATCAATTCCATATTTCTTCGAGAAATTCGATCCAG
AAAATTACTCAATTTGGTATGGTGAATATAAATATCCAGAAGAATTGACTAAGGTATTTA
TGAGCTGCAATTTAATCACCGGTATGTTCCAACGTCTTGATAAAATGAGAAAACAAGCAT
TTGCCTCATGCTGCCTCTTCGGTGAAGACAATAATAGCACAATTTCTGGTGTCTGGGTAT
GGCGTGGACAAGAGCTTGCATTTGGACTTTCACCAGATTGGCAAATCGATTACGAGAGCT
ATGATTGGAAGAAATTAGATCCATCCAGTGAAGAAACTAAGAAATTGGTAACACAATATT
TCTCATGGACTGGAACTGACAAAGGAGGCCGCAAATTCAATCAAGGCAAAATTTTCAAAT
AA
>g714.t12 Gene=g714 Length=291
MLLYTYPENFRAYKALIAAQYSGAKVDIAPNFVFGETNRTESFLKKFPLGKVPALETDDG
KYLAESNAIAYYVSNAQLRGASDFEKAEVLQWLSFADNEIGPAAAAWVYPALGYIQFNKL
SHERAKQDIARSLERLQARLVNNTYLVGERITLADIVVFTSLLSLFQHVADPAYRKPFFA
VNRWFNTILNQPQTKAVKRKRNNHNNQQLRRKRRRKKQNLLKRWMKQNWHLLLNQNQKIH
LILSQKAHSIWTTSSVYTVMKMKQNQFHISSRNSIQKITQFGMVNINIQKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g714.t12 | CDD | cd03044 | GST_N_EF1Bgamma | 3 | 75 | 8.35651E-33 |
| 9 | g714.t12 | CDD | cd03181 | GST_C_EF1Bgamma_like | 85 | 197 | 2.77604E-57 |
| 8 | g714.t12 | Coils | Coil | Coil | 199 | 219 | - |
| 7 | g714.t12 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 73 | 3.5E-25 |
| 6 | g714.t12 | Gene3D | G3DSA:1.20.1050.10 | - | 75 | 208 | 1.2E-43 |
| 12 | g714.t12 | MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 217 | - |
| 11 | g714.t12 | MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 217 | - |
| 3 | g714.t12 | PANTHER | PTHR43986 | ELONGATION FACTOR 1-GAMMA | 3 | 218 | 4.5E-77 |
| 2 | g714.t12 | Pfam | PF02798 | Glutathione S-transferase, N-terminal domain | 3 | 74 | 1.1E-17 |
| 1 | g714.t12 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 108 | 192 | 9.1E-14 |
| 14 | g714.t12 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 81 | 18.084 |
| 13 | g714.t12 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 82 | 220 | 21.501 |
| 15 | g714.t12 | SFLD | SFLDG00358 | Main (cytGST) | 3 | 188 | 2.7E-29 |
| 16 | g714.t12 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 3 | 188 | 2.7E-29 |
| 4 | g714.t12 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 1 | 75 | 8.7E-16 |
| 5 | g714.t12 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 75 | 199 | 1.36E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K03233 (elongation factor 1-gamma)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
