General information for g714.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Elongation factor 1-gamma.
Parent gene
- The parent gene g714 is located on chr_3: 5473182..5479543 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g714 | g714.t23 | TTS | g714.t23 | 5471464 | 5471464 |
| chr_3 | g714 | g714.t23 | isoform | g714.t23 | 5472310 | 5472800 |
| chr_3 | g714 | g714.t23 | exon | g714.t23.exon1 | 5472310 | 5472800 |
| chr_3 | g714 | g714.t23 | cds | g714.t23.CDS1 | 5472312 | 5472800 |
| chr_3 | g714 | g714.t23 | TSS | g714.t23 | 5473488 | 5473488 |
Sequences
>g714.t23 Gene=g714 Length=491
TACGTCTCAAATGCTCAATTACGCGGTGCAAGTGATTTTGAGAAAGCGGAAGTTCTTCAA
TGGTTGAGTTTTGCCGATAATGAAATTGGACCAGCTGCAGCAGCATGGGTCTATCCAGCT
TTGGGCTACATCCAATTCAACAAGCTATCACATGAACGTGCAAAGCAAGATATTGCTCGT
TCACTCGAAAGATTGCAAGCTCGTCTCGTAAATAATACTTATCTTGTCGGCGAACGCATC
ACACTTGCCGATATTGTTGTTTTCACTAGCCTCCTTTCATTATTCCAACACGTTGCTGAT
CCAGCATATCGCAAGCCATTCTTTGCTGTCAATCGTTGGTTCAATACAATTCTCAATCAG
CCACAAACAAAAGCAGTTGTTAAGAATTTCACTTTCTGTGAAAAAGAAACACCATTCGAT
CCTAAGAAATATGCCGAATTCCAAGCCAAATTTGGCGGTGGTGCTCAACAAAAGGAAAAG
AAGGAAAAAGA
>g714.t23 Gene=g714 Length=163
YVSNAQLRGASDFEKAEVLQWLSFADNEIGPAAAAWVYPALGYIQFNKLSHERAKQDIAR
SLERLQARLVNNTYLVGERITLADIVVFTSLLSLFQHVADPAYRKPFFAVNRWFNTILNQ
PQTKAVVKNFTFCEKETPFDPKKYAEFQAKFGGGAQQKEKKEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g714.t23 | CDD | cd03181 | GST_C_EF1Bgamma_like | 14 | 136 | 0.000 |
| 4 | g714.t23 | Gene3D | G3DSA:1.20.1050.10 | - | 4 | 141 | 0.000 |
| 2 | g714.t23 | PANTHER | PTHR43986 | ELONGATION FACTOR 1-GAMMA | 1 | 159 | 0.000 |
| 1 | g714.t23 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 37 | 121 | 0.000 |
| 5 | g714.t23 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 11 | 139 | 23.448 |
| 3 | g714.t23 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 7 | 135 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
