Gene loci information

Transcript annotation

  • This transcript has been annotated as Elongation factor 1-gamma.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g714 g714.t7 TTS g714.t7 5471464 5471464
chr_3 g714 g714.t7 isoform g714.t7 5471712 5472843
chr_3 g714 g714.t7 exon g714.t7.exon1 5471712 5471822
chr_3 g714 g714.t7 cds g714.t7.CDS1 5471803 5471822
chr_3 g714 g714.t7 exon g714.t7.exon2 5471891 5472843
chr_3 g714 g714.t7 cds g714.t7.CDS2 5471891 5472233
chr_3 g714 g714.t7 TSS g714.t7 5473488 5473488

Sequences

>g714.t7 Gene=g714 Length=1064
TGATGACGGTAAATATTTAGCTGAATCAAATGCAATTGCATACTACGTCTCAAATGCTCA
ATTACGCGGTGCAAGTGATTTTGAGAAAGCGGAAGTTCTTCAATGGTTGAGTTTTGCCGA
TAATGAAATTGGACCAGCTGCAGCAGCATGGGTCTATCCAGCTTTGGGCTACATCCAATT
CAACAAGCTATCACATGAACGTGCAAAGCAAGATATTGCTCGTTCACTCGAAAGATTGCA
AGCTCGTCTCGTAAATAATACTTATCTTGTCGGCGAACGCATCACACTTGCCGATATTGT
TGTTTTCACTAGCCTCCTTTCATTATTCCAACACGTTGCTGATCCAGCATATCGCAAGCC
ATTCTTTGCTGTCAATCGTTGGTTCAATACAATTCTCAATCAGCCACAAACAAAAGCAGT
TGTTAAGAATTTCACTTTCTGTGAAAAAGAAACACCATTCGATCCTAAGAAATATGCCGA
ATTCCAAGCCAAATTTGGCGGTGGTGCTCAACAAAAGGAAAAGAAGGAAAAAGAAAAGAA
AGAGAAACAACCACAACAACCAGCAGCTGAGAAGAAAAAGAAGGAGAAAGAAGCAGAACC
TGCTGAAGAGATGGATGAAGCAGAATTGGCACTTGCTGCTGAACCAAAATCAAAAGATCC
ATTTGATTCTCTCCCAAAAGGCACATTCAATATGGACGACTTCAAGCGTGTATACAGTAA
TGAAGATGAAGCAAAATCAATTCCATATTTCTTCGAGAAATTCGATCCAGAAAATTACTC
AATTTGGTATGGTGAATATAAATATCCAGAAGAATTGACTAAGGTATTTATGAGCTGCAA
TTTAATCACCGGTATGTTCCAACGTCTTGATAAAATGAGAAAACAAGCATTTGCCTCATG
CTGCCTCTTCGGTGAAGACAATAATAGCACAATTTCTGGTGTCTGGGTATGGCAAATTAG
ATCCATCCAGTGAAGAAACTAAGAAATTGGTAACACAATATTTCTCATGGACTGGAACTG
ACAAAGGAGGCCGCAAATTCAATCAAGGCAAAATTTTCAAATAA

>g714.t7 Gene=g714 Length=120
MDEAELALAAEPKSKDPFDSLPKGTFNMDDFKRVYSNEDEAKSIPYFFEKFDPENYSIWY
GEYKYPEELTKVFMSCNLITGMFQRLDKMRKQAFASCCLFGEDNNSTISGVWVWQIRSIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g714.t7 Gene3D G3DSA:3.30.70.1010 - 14 120 9.9E-51
6 g714.t7 MobiDBLite mobidb-lite consensus disorder prediction 1 21 -
7 g714.t7 MobiDBLite mobidb-lite consensus disorder prediction 1 18 -
2 g714.t7 PANTHER PTHR43986:SF1 ELONGATION FACTOR 1-GAMMA 1 115 6.2E-55
3 g714.t7 PANTHER PTHR43986 ELONGATION FACTOR 1-GAMMA 1 115 6.2E-55
1 g714.t7 Pfam PF00647 Elongation factor 1 gamma, conserved domain 13 115 5.6E-47
9 g714.t7 ProSiteProfiles PS50040 Elongation factor 1 (EF-1) gamma C-terminal domain profile. 14 120 58.951
5 g714.t7 SMART SM01183 EF1G_2 13 118 1.7E-69
4 g714.t7 SUPERFAMILY SSF89942 eEF1-gamma domain 14 115 5.36E-48

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003746 translation elongation factor activity MF
GO:0006414 translational elongation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed