General information for g7177.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative glycerol kinase 5.
Parent gene
- The parent gene g7177 is located on chr_2: 21905366..21908558 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7177 | g7177.t1 | TSS | g7177.t1 | 21905252 | 21905252 |
| chr_2 | g7177 | g7177.t1 | isoform | g7177.t1 | 21905366 | 21908558 |
| chr_2 | g7177 | g7177.t1 | exon | g7177.t1.exon1 | 21905366 | 21905467 |
| chr_2 | g7177 | g7177.t1 | cds | g7177.t1.CDS1 | 21905366 | 21905467 |
| chr_2 | g7177 | g7177.t1 | exon | g7177.t1.exon2 | 21906974 | 21907067 |
| chr_2 | g7177 | g7177.t1 | cds | g7177.t1.CDS2 | 21906974 | 21907067 |
| chr_2 | g7177 | g7177.t1 | exon | g7177.t1.exon3 | 21907129 | 21907388 |
| chr_2 | g7177 | g7177.t1 | cds | g7177.t1.CDS3 | 21907129 | 21907388 |
| chr_2 | g7177 | g7177.t1 | exon | g7177.t1.exon4 | 21907470 | 21908558 |
| chr_2 | g7177 | g7177.t1 | cds | g7177.t1.CDS4 | 21907470 | 21908558 |
| chr_2 | g7177 | g7177.t1 | TTS | g7177.t1 | 21908725 | 21908725 |
Sequences
>g7177.t1 Gene=g7177 Length=1545
ATGGCAAAATCAATTGTAGTACTTGATTTCGGATCGACTTCTGTTCGTTCTTTTATAATA
AGTAGTGATACATTTGAAATACTTGGAAGTTCTAGATATGAGATAAAATATATTCAATCT
GATAATGGCACGTGTGAGATCAATCCAGATGAACTCTTTTCAAATATTTTAAAAATATTA
CGTGAAGCGTTAAAAGACGCTCAACTAAATGTTGAAAATGTACTTTGTCTTGCGATCTCA
GTTCAACGTTCAACATTTGCCATCATTGACAAGATCACTGGCGAACCATATACACAGTTG
ATATCATGGGCAGATCGACGAGCACAAGAAAGAACTGACAAAATCAATAAAAGTTTGATA
TTGAAAACCATTCGAAATGCTTGCAGTGTTATATTTTGTTTAACACGTAAAAATCGATAC
AAACAAGCTAGCAATTTTAAGCTACAAAGTGCATTTATTGCACCACGTTTTTCGTACTTA
TTGCAAAACAACCGGAAATTAAGAGAAGCAACGAAAGCTGGTCGTACTGCATTATGCACA
ATGGATACATGGCTTTTAAATCGACTAAAAAATATCACCAAATTTGAAAACTTTGAATTC
ATCACTGATGTGACTAATGCTTCTGCTACTGGTTTTCTCGATCCATTCACTTTAAAAGTT
ATTCCAATGATGTTGCAGTATTTTGGCATTGATGAAATGATGCTGCCACGAATTGTGGAC
AATTCATATGATTATGGTTATACGGACAAAGCTCTATTTGGTATGCCGATACGCATCGCC
ACAATCATCGCTGACCAAGCTGCAGCATTAATTGGGAATGGTTGCTTTCGACGAATGGAT
ACAAAAATTTCATTAGGAACGGGGACTTTTTTAAGTATTAATTCTGGTGAAAAATGTATG
GGATCGCGTAATGGTGCTAATCCAATGATTGCTTGGAATACAGAAACAAGAAGCAAAAAA
CAATCGAATGTTTATTATTCAGAATATCATTTTCACGAATCGTCAAAGTTAATTCGATTT
GCTAAAACTGTAGGTCTCTGCAATGAAGTCGGAGAGCTTTCAGATATGGCTCAATCAGTA
AATGATTCAGATGGAATAATTTTCATTCCAAAATTTAATTCAATGGCCGGCTTTATTGGT
TTTAAGCAATCAACAACGAAATGTCATTTAGTACGAGCAGTTCTCGAGACAATTGTATTT
AAAGTTGCTCAATTTTACTTTTTCACAAAAGAAGAGACGAATTATCATTATGATAAAATA
CGCATTGATGGTGGAATATCTGCAAATGATTTTATCTGTCAATCAATAGCTGATTTGCTG
AATATTCACATTGAAAGAGGCATTAATAGCAGTGAAATAACGTCAATTGGTTGCGCATAC
TTGGCTCTTTATAATTGCGGCATTCTTGAAAAACTTGAGCATGCCTCGAAATTTTATAAG
ATAGAGAAGTTGTTCACTCCAAATGAGAGCAATAGACGAGAGCTTTTTATGCGATATAAA
AGATTTGAAGAAGTTAATAATCGATATGAGAAGATTTTGTTATAA
>g7177.t1 Gene=g7177 Length=514
MAKSIVVLDFGSTSVRSFIISSDTFEILGSSRYEIKYIQSDNGTCEINPDELFSNILKIL
REALKDAQLNVENVLCLAISVQRSTFAIIDKITGEPYTQLISWADRRAQERTDKINKSLI
LKTIRNACSVIFCLTRKNRYKQASNFKLQSAFIAPRFSYLLQNNRKLREATKAGRTALCT
MDTWLLNRLKNITKFENFEFITDVTNASATGFLDPFTLKVIPMMLQYFGIDEMMLPRIVD
NSYDYGYTDKALFGMPIRIATIIADQAAALIGNGCFRRMDTKISLGTGTFLSINSGEKCM
GSRNGANPMIAWNTETRSKKQSNVYYSEYHFHESSKLIRFAKTVGLCNEVGELSDMAQSV
NDSDGIIFIPKFNSMAGFIGFKQSTTKCHLVRAVLETIVFKVAQFYFFTKEETNYHYDKI
RIDGGISANDFICQSIADLLNIHIERGINSSEITSIGCAYLALYNCGILEKLEHASKFYK
IEKLFTPNESNRRELFMRYKRFEEVNNRYEKILL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7177.t1 | Coils | Coil | Coil | 57 | 77 | - |
| 7 | g7177.t1 | Gene3D | G3DSA:3.30.420.40 | - | 2 | 273 | 2.3E-62 |
| 8 | g7177.t1 | Gene3D | G3DSA:3.30.420.40 | - | 275 | 512 | 1.7E-44 |
| 3 | g7177.t1 | PANTHER | PTHR10196 | SUGAR KINASE | 4 | 506 | 3.8E-135 |
| 4 | g7177.t1 | PANTHER | PTHR10196:SF68 | GLYCEROL KINASE 5-RELATED | 4 | 506 | 3.8E-135 |
| 10 | g7177.t1 | PIRSF | PIRSF000538 | GlpK | 2 | 513 | 1.2E-84 |
| 2 | g7177.t1 | Pfam | PF00370 | FGGY family of carbohydrate kinases, N-terminal domain | 5 | 272 | 1.3E-31 |
| 1 | g7177.t1 | Pfam | PF02782 | FGGY family of carbohydrate kinases, C-terminal domain | 282 | 465 | 1.4E-19 |
| 6 | g7177.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 5 | 275 | 5.89E-48 |
| 5 | g7177.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 274 | 509 | 8.19E-36 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed