General information for g7178.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.
Parent gene
- The parent gene g7178 is located on chr_2: 21918525..21920795 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7178 | g7178.t1 | isoform | g7178.t1 | 21918525 | 21920795 |
| chr_2 | g7178 | g7178.t1 | exon | g7178.t1.exon1 | 21918525 | 21918709 |
| chr_2 | g7178 | g7178.t1 | cds | g7178.t1.CDS1 | 21918525 | 21918709 |
| chr_2 | g7178 | g7178.t1 | exon | g7178.t1.exon2 | 21918966 | 21919726 |
| chr_2 | g7178 | g7178.t1 | cds | g7178.t1.CDS2 | 21918966 | 21919726 |
| chr_2 | g7178 | g7178.t1 | exon | g7178.t1.exon3 | 21919782 | 21920218 |
| chr_2 | g7178 | g7178.t1 | cds | g7178.t1.CDS3 | 21919782 | 21920218 |
| chr_2 | g7178 | g7178.t1 | exon | g7178.t1.exon4 | 21920279 | 21920566 |
| chr_2 | g7178 | g7178.t1 | cds | g7178.t1.CDS4 | 21920279 | 21920566 |
| chr_2 | g7178 | g7178.t1 | exon | g7178.t1.exon5 | 21920634 | 21920795 |
| chr_2 | g7178 | g7178.t1 | cds | g7178.t1.CDS5 | 21920634 | 21920795 |
| chr_2 | g7178 | g7178.t1 | TSS | g7178.t1 | NA | NA |
| chr_2 | g7178 | g7178.t1 | TTS | g7178.t1 | NA | NA |
Sequences
>g7178.t1 Gene=g7178 Length=1833
ATGTCAAACATTGATATATCAGCTCATAAAGAGAAAAATGAAAGAAATAAAGAAGAAAAA
TTTCCAATTCAAATTAATGGAACATTTCCAAAGCATCGACATGAAGTGCTTAATATAAAT
GGATGGGGTTTTAAAGACAGCTTTTTTACACTTAAAAATGGACACCTAACTTTTACAGGA
AACAGATATTCAATGTGCAATATTCCATTCAAAAATGCGCGACAACATCTTTTGCAACTT
TTCAACTATGATATCATTAATTATAAACCACACATCAATCCAATTCATACTGAAAAAGAT
TACCCACCATCAATTGAGAATCAAGCATTTGTTGAAGCTCTCAAAAACACAAACATCGAC
TACTCACTTGATTTCAATGATCGCTTTTTCAGATGTCATGGACAATCAACAAGAGATTTT
TATATCCTACGCTATAGCAAATTTCAACGAATTCCCGACTTAGTTGTTTGGCCAAAAAAT
CATGATGATGTTGTGCTAATCGTAAAACTTGCAAATAAACACTTTAGTGTGTTGATTCCT
TTTGGTGGTGGTACAAACACTACGCTTTCCCTCAATTACACAAAAAAAGATAGTAACCGA
TTTTATGTATCGCTTGATACATCGTTGATGAACCGCATATTATGGATCGATAAAGAAAGT
ATGCTCGCATGCATAGAGTCTGGCATAACCGGTTTTGATCTCAGCAGAGCGTTAGAGAAA
CATGGTTTCACAATGGGTCATGAACCAGATTCAATTGAATTTTCAACATTAGGTGGTTGG
GTAGCAACTCGCAGCAGTGGAATGAAACAGCAAACTTATGGAAATATTGAAGACATTGTA
ATGAAAATTACTTTTGTGACAAGTATTGGTGTTATGGAGAAAAATTTTATTGCCCCACGC
TGCTCTATTGGACCTAATTTTGATCATGTTGTAATGGGCTCAGAAGGAACTTTGGGTGTA
ATTACAAAAGTTGTTATAAAATTACACAAATTCCCATCCATTCGTCGCTTTGGCAGCATC
ATTTTCCCTGACTTTGAATTGGGCATCAAGTTCATGTATGATGTTAGCAAATTCAGTCAA
AAACCATCGAATTTAAGGCTGATTGACAACAAACACTTTCAACTGGGTCAAGTACTGCGA
CACAATAAAACTTTCATGGGCGATTTTATTGATCTGTTTAAAAAACATAGTGTATCGATT
TTTTTTCAATATAAAATGTCAAAAGTTGCTCTCGGAACTTATTTGATCGAGGGTGAAAAA
GATGATGTGAATGCTATAGAAACCAAATTGAAAAAGACAGCATGGAAATATTGGGGTATT
TCCGCTGGCAAAAAGTATGGTGAAAGAGCTTATCTAATGACCCTCACTGTATGCTATATT
CGAGATTTCTTTTTCGATATGGGTTTTCTATTTGACTCTATTGAACCAAGTGTTTCATGG
AGTAAATCTTGGTCAATGATTAATGCAATAATGAATGTTTGGAAAGAAGAAACTGGAAAA
AGAAATATTTTTAATATCCTTGCACTTCGAATTTCACAAATTTATAACAATGGTGTCTGT
GTTTATTTCTATTATGGAATAGGACCGACAACTGAGTATGATCAACTGCAAATTTTTGAA
GAGCTTACAAATATTTTACGAAAGGCTATCTTAACAACAGGAGGAAATTTATCACACCAT
CATGGTGTTGGAAAAAAAAGTTCAAAGTGGTATCCAGCATCTGTCTCGAGAGTTGGCGTT
GATGTATTCAATGCTATTAAATCTAAAGTTGATCCGAAAAATGTTTTCGATGTCGGAAAT
TTGGTTGAGGATAAAAGCAGAGCAAAACTGTAA
>g7178.t1 Gene=g7178 Length=610
MSNIDISAHKEKNERNKEEKFPIQINGTFPKHRHEVLNINGWGFKDSFFTLKNGHLTFTG
NRYSMCNIPFKNARQHLLQLFNYDIINYKPHINPIHTEKDYPPSIENQAFVEALKNTNID
YSLDFNDRFFRCHGQSTRDFYILRYSKFQRIPDLVVWPKNHDDVVLIVKLANKHFSVLIP
FGGGTNTTLSLNYTKKDSNRFYVSLDTSLMNRILWIDKESMLACIESGITGFDLSRALEK
HGFTMGHEPDSIEFSTLGGWVATRSSGMKQQTYGNIEDIVMKITFVTSIGVMEKNFIAPR
CSIGPNFDHVVMGSEGTLGVITKVVIKLHKFPSIRRFGSIIFPDFELGIKFMYDVSKFSQ
KPSNLRLIDNKHFQLGQVLRHNKTFMGDFIDLFKKHSVSIFFQYKMSKVALGTYLIEGEK
DDVNAIETKLKKTAWKYWGISAGKKYGERAYLMTLTVCYIRDFFFDMGFLFDSIEPSVSW
SKSWSMINAIMNVWKEETGKRNIFNILALRISQIYNNGVCVYFYYGIGPTTEYDQLQIFE
ELTNILRKAILTTGGNLSHHHGVGKKSSKWYPASVSRVGVDVFNAIKSKVDPKNVFDVGN
LVEDKSRAKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g7178.t1 | Gene3D | G3DSA:3.30.43.10 | - | 38 | 208 | 2.1E-49 |
| 11 | g7178.t1 | Gene3D | G3DSA:3.30.160.650 | - | 46 | 98 | 2.1E-49 |
| 8 | g7178.t1 | Gene3D | G3DSA:3.30.465.10 | - | 211 | 330 | 3.3E-40 |
| 7 | g7178.t1 | Gene3D | G3DSA:3.30.70.3450 | - | 332 | 455 | 8.4E-31 |
| 9 | g7178.t1 | Gene3D | G3DSA:3.30.300.330 | - | 456 | 561 | 5.3E-26 |
| 12 | g7178.t1 | Gene3D | G3DSA:1.10.45.10 | - | 562 | 602 | 4.1E-10 |
| 6 | g7178.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - |
| 3 | g7178.t1 | PANTHER | PTHR46568 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL | 11 | 602 | 3.9E-192 |
| 1 | g7178.t1 | Pfam | PF01565 | FAD binding domain | 152 | 290 | 4.1E-33 |
| 2 | g7178.t1 | Pfam | PF02913 | FAD linked oxidases, C-terminal domain | 333 | 596 | 1.8E-25 |
| 13 | g7178.t1 | ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 148 | 331 | 22.974 |
| 5 | g7178.t1 | SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 135 | 332 | 1.73E-44 |
| 4 | g7178.t1 | SUPERFAMILY | SSF55103 | FAD-linked oxidases, C-terminal domain | 336 | 603 | 7.52E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008609 | alkylglycerone-phosphate synthase activity | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0055114 | NA | NA |
| GO:0071949 | FAD binding | MF |
| GO:0016491 | oxidoreductase activity | MF |
| GO:0008610 | lipid biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed