General information for g7191.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7191 is located on chr_2: 22026711..22027152 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7191 | g7191.t1 | TSS | g7191.t1 | 22026477 | 22026477 |
| chr_2 | g7191 | g7191.t1 | isoform | g7191.t1 | 22026536 | 22027075 |
| chr_2 | g7191 | g7191.t1 | exon | g7191.t1.exon1 | 22026536 | 22026658 |
| chr_2 | g7191 | g7191.t1 | cds | g7191.t1.CDS1 | 22026536 | 22026658 |
| chr_2 | g7191 | g7191.t1 | exon | g7191.t1.exon2 | 22026713 | 22027075 |
| chr_2 | g7191 | g7191.t1 | cds | g7191.t1.CDS2 | 22026713 | 22027075 |
| chr_2 | g7191 | g7191.t1 | TTS | g7191.t1 | 22027146 | 22027146 |
Sequences
>g7191.t1 Gene=g7191 Length=486
ATGAACAAGATTGCAACAAAAGGAAGGAATTTTTTACTTTTGGGACAATGTTTACCATGT
ACTAAACAAAATGCTGCAAAAGTTCGAGTAAGACGAATGGTTTTAGATACAAATATTAAT
ATGTATTTCAGAGAAGATAAAATGTTCTATGTACATGATCCAAACAAAATTTGCAAGTCC
GGTGATATTGTACTAATAAAAGAGTTGGAGAAAAAGCTTACAACGCTTATTACACATTCA
GTCGAGGAAATAGTTTTTCCATTAGGTGATGTCACAGATCCGATAACTAATAAAAAATGT
GTTGTAGGAAAATACAGAGATCAAATCGAAGAAGCTAATCAATTATATGGAAAGAAAGAA
ACTGCATTTGATTATGAAAAGGCACCACCAAGAGGAAAATTAGAGGGAAAACAAGATTTC
TCACATGGTATCACATATCTTAAATACCATGAAAGTGAAGAAGAACAACCATTTGGAATT
CAGTAA
>g7191.t1 Gene=g7191 Length=161
MNKIATKGRNFLLLGQCLPCTKQNAAKVRVRRMVLDTNINMYFREDKMFYVHDPNKICKS
GDIVLIKELEKKLTTLITHSVEEIVFPLGDVTDPITNKKCVVGKYRDQIEEANQLYGKKE
TAFDYEKAPPRGKLEGKQDFSHGITYLKYHESEEEQPFGIQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7191.t1 | Gene3D | G3DSA:2.40.50.140 | - | 1 | 109 | 5.8E-35 |
| 2 | g7191.t1 | PANTHER | PTHR24088 | 28S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL | 1 | 137 | 8.7E-42 |
| 3 | g7191.t1 | PANTHER | PTHR24088:SF0 | 28S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL | 1 | 137 | 8.7E-42 |
| 1 | g7191.t1 | Pfam | PF00366 | Ribosomal protein S17 | 22 | 80 | 1.2E-10 |
| 7 | g7191.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 25 | - |
| 8 | g7191.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 10 | - |
| 9 | g7191.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 11 | 20 | - |
| 10 | g7191.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 21 | 25 | - |
| 6 | g7191.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 26 | 161 | - |
| 4 | g7191.t1 | SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 12 | 111 | 8.14E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005840 | ribosome | CC |
| GO:0006412 | translation | BP |
| GO:0005763 | mitochondrial small ribosomal subunit | CC |
| GO:0003735 | structural constituent of ribosome | MF |
KEGG
Orthology
- This transcript has been annotated with K02961 (small subunit ribosomal protein S17)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
