General information for g7191.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7191 is located on chr_2: 22026711..22027152 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7191 | g7191.t3 | TSS | g7191.t3 | 22026477 | 22026477 |
| chr_2 | g7191 | g7191.t3 | isoform | g7191.t3 | 22026711 | 22027152 |
| chr_2 | g7191 | g7191.t3 | exon | g7191.t3.exon1 | 22026711 | 22027152 |
| chr_2 | g7191 | g7191.t3 | cds | g7191.t3.CDS1 | 22026731 | 22027075 |
| chr_2 | g7191 | g7191.t3 | TTS | g7191.t3 | 22027146 | 22027146 |
Sequences
>g7191.t3 Gene=g7191 Length=442
AGTATTTCAGAGAAGATAAAATGTTCTATGTACATGATCCAAACAAAATTTGCAAGTCCG
GTGATATTGTACTAATAAAAGAGTTGGAGAAAAAGCTTACAACGCTTATTACACATTCAG
TCGAGGAAATAGTTTTTCCATTAGGTGATGTCACAGATCCGATAACTAATAAAAAATGTG
TTGTAGGAAAATACAGAGATCAAATCGAAGAAGCTAATCAATTATATGGAAAGAAAGAAA
CTGCATTTGATTATGAAAAGGCACCACCAAGAGGAAAATTAGAGGGAAAACAAGATTTCT
CACATGGTATCACATATCTTAAATACCATGAAAGTGAAGAAGAACAACCATTTGGAATTC
AGTAAAAATCGCAAAAATACCTCATTATTTTTGTTTATTTTAGAAAGAAATAGTAAATGC
ATAATTTTAGAAATATACAATG
>g7191.t3 Gene=g7191 Length=114
MFYVHDPNKICKSGDIVLIKELEKKLTTLITHSVEEIVFPLGDVTDPITNKKCVVGKYRD
QIEEANQLYGKKETAFDYEKAPPRGKLEGKQDFSHGITYLKYHESEEEQPFGIQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7191.t3 | Gene3D | G3DSA:2.40.50.140 | - | 1 | 62 | 0 |
| 1 | g7191.t3 | PANTHER | PTHR24088 | 28S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL | 2 | 90 | 0 |
| 2 | g7191.t3 | PANTHER | PTHR24088:SF0 | 28S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL | 2 | 90 | 0 |
| 3 | g7191.t3 | SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 2 | 64 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005763 | mitochondrial small ribosomal subunit | CC |
| GO:0003735 | structural constituent of ribosome | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
