General information for g7203.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7203 is located on chr_2: 22079429..22085804 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7203 | g7203.t1 | isoform | g7203.t1 | 22077243 | 22085804 |
| chr_2 | g7203 | g7203.t1 | exon | g7203.t1.exon1 | 22077243 | 22077248 |
| chr_2 | g7203 | g7203.t1 | cds | g7203.t1.CDS1 | 22077243 | 22077248 |
| chr_2 | g7203 | g7203.t1 | exon | g7203.t1.exon2 | 22080037 | 22080068 |
| chr_2 | g7203 | g7203.t1 | cds | g7203.t1.CDS2 | 22080037 | 22080068 |
| chr_2 | g7203 | g7203.t1 | exon | g7203.t1.exon3 | 22084532 | 22084785 |
| chr_2 | g7203 | g7203.t1 | cds | g7203.t1.CDS3 | 22084532 | 22084785 |
| chr_2 | g7203 | g7203.t1 | exon | g7203.t1.exon4 | 22085584 | 22085804 |
| chr_2 | g7203 | g7203.t1 | cds | g7203.t1.CDS4 | 22085584 | 22085804 |
| chr_2 | g7203 | g7203.t1 | TSS | g7203.t1 | NA | NA |
| chr_2 | g7203 | g7203.t1 | TTS | g7203.t1 | NA | NA |
Sequences
>g7203.t1 Gene=g7203 Length=513
ATGAAGAGAGTTAGTGAAGAGAGGAAATCCCGTGGAAGTTCAACGATGCAAGTGGAAAGT
AACAATACAAATGGCTTGCATAATCGTGCTCGCCTTTTTGCGCGAATTCCTGCATCAATC
GATCTCCGTTCGGTGTCAAATTGTCAGGCTGAAAGTGAAAAACACTGGAAGACGAGCAAT
AACAATAACAACAACAATCAGAGTGGAAACAACTTTACTAAACCATTACATGTAAAAACA
TCGAATTTAGAAAATACACTCGTTAAATTAGGCTCAGATGGTTTACCACTTGATCCACGC
GATTGGACACGACAACATGTACGACTATGGATTGTCAATCTCGGTCGTTCAGAAGGAATT
AATGATGTTGATAACATATCAGATAAATTTAAGATGAATGGAAAAGCCTTGTGCTTAATG
TCAGTTGAAATGTTCTTAAGCCGCTTCCCTACAGGTGGAAAAATGCTTTACCGCGATTTT
CGTCTCAGACTAACACGAGCACTAAGCTTATAA
>g7203.t1 Gene=g7203 Length=170
MKRVSEERKSRGSSTMQVESNNTNGLHNRARLFARIPASIDLRSVSNCQAESEKHWKTSN
NNNNNNQSGNNFTKPLHVKTSNLENTLVKLGSDGLPLDPRDWTRQHVRLWIVNLGRSEGI
NDVDNISDKFKMNGKALCLMSVEMFLSRFPTGGKMLYRDFRLRLTRALSL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7203.t1 | Gene3D | G3DSA:1.10.150.50 | Transcription Factor | 89 | 170 | 9.9E-30 |
| 6 | g7203.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - |
| 2 | g7203.t1 | PANTHER | PTHR11849:SF187 | ETS-DOMAIN LACKING | 63 | 169 | 1.0E-18 |
| 3 | g7203.t1 | PANTHER | PTHR11849 | ETS | 63 | 169 | 1.0E-18 |
| 1 | g7203.t1 | Pfam | PF02198 | Sterile alpha motif (SAM)/Pointed domain | 94 | 159 | 5.0E-13 |
| 8 | g7203.t1 | ProSiteProfiles | PS51433 | Pointed (PNT) domain profile. | 81 | 167 | 33.286 |
| 5 | g7203.t1 | SMART | SM00251 | SAM2_3 | 83 | 167 | 1.4E-8 |
| 4 | g7203.t1 | SUPERFAMILY | SSF47769 | SAM/Pointed domain | 61 | 166 | 7.85E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0043565 | sequence-specific DNA binding | MF |
KEGG
Orthology
- This transcript has been annotated with K20232 (ETS-domain lacking)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
