General information for g7203.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7203 is located on chr_2: 22079429..22085804 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7203 | g7203.t4 | TSS | g7203.t4 | 22079428 | 22079428 |
| chr_2 | g7203 | g7203.t4 | isoform | g7203.t4 | 22079429 | 22085804 |
| chr_2 | g7203 | g7203.t4 | exon | g7203.t4.exon1 | 22079429 | 22080068 |
| chr_2 | g7203 | g7203.t4 | TTS | g7203.t4 | 22079901 | 22079901 |
| chr_2 | g7203 | g7203.t4 | exon | g7203.t4.exon2 | 22084532 | 22084785 |
| chr_2 | g7203 | g7203.t4 | cds | g7203.t4.CDS1 | 22084539 | 22084785 |
| chr_2 | g7203 | g7203.t4 | exon | g7203.t4.exon3 | 22085584 | 22085804 |
| chr_2 | g7203 | g7203.t4 | cds | g7203.t4.CDS2 | 22085584 | 22085804 |
Sequences
>g7203.t4 Gene=g7203 Length=1115
AGTTTAACTTGAGATCTCAACGTGGAAGCACGCTAGAAAAAAGTTCTCTTCATCTTATTC
GAATTCGTTCGTATACAATCTTTTTTAATTTTATAAAGAAGAAAATCTCTCGAGTGGAAC
TCACTGAGCGAAAAAAATAAAATATAACAACAATTGTGGTAAAAAAAGAGAGAAAGAAAA
ATAGAAATCTCAACAATTAACTGTAAAGTTCAAAACTTACTCGGGTGTAAAAGAACTGCA
GTGAAATAAAAAAATTGTTAATTAAAAATTTAATTTAACCGCGAAGAACCCCCCAAGACA
GAAACAGCGAGTAAGCTAGTGAAAGATAATAGAAGAGAAGAAGTAAACACTTGAACACAC
TTCCTGTCTTGCAATTGAATAAGTAGGAAATCACGGAAATAAATAAGTCGAACTAGAATT
GAGCTCACTTTACAAATCAACCGCAACCGAAAATAAAGAGTAGTGAAGAAGAAAAATAAA
AAGAAAGAAAAATCAACGGATTGAGGAGAAGCAGAAAAATTTACACACAAACAAAGTAGA
GTGTGTTTTAGACGAAACCATCTGCTACTTTAAATAATATTCGATTGGACTATTTAAAGC
AGTAATAGAGAGTTAGTGAAGAGAGGAAATCCCGTGGAAGTTCAACGATGCAAGTGGAAA
GTAACAATACAAATGGCTTGCATAATCGTGCTCGCCTTTTTGCGCGAATTCCTGCATCAA
TCGATCTCCGTTCGGTGTCAAATTGTCAGGCTGAAAGTGAAAAACACTGGAAGACGAGCA
ATAACAATAACAACAACAATCAGAGTGGAAACAACTTTACTAAACCATTACATGTAAAAA
CATCGAATTTAGAAAATACACTCGTTAAATTAGGCTCAGATGGTTTACCACTTGATCCAC
GCGATTGGACACGACAACATGTACGACTATGGATTGTCAATCTCGGTCGTTCAGAAGGAA
TTAATGATGTTGATAACATATCAGATAAATTTAAGATGAATGGAAAAGCCTTGTGCTTAA
TGTCAGTTGAAATGTTCTTAAGCCGCTTCCCTACAGGTGGAAAAATGCTTTACCGCGATT
TTCGTCTCAGACTAACACGAGCACTAAGCTTATAA
>g7203.t4 Gene=g7203 Length=155
MQVESNNTNGLHNRARLFARIPASIDLRSVSNCQAESEKHWKTSNNNNNNNQSGNNFTKP
LHVKTSNLENTLVKLGSDGLPLDPRDWTRQHVRLWIVNLGRSEGINDVDNISDKFKMNGK
ALCLMSVEMFLSRFPTGGKMLYRDFRLRLTRALSL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7203.t4 | Gene3D | G3DSA:1.10.150.50 | Transcription Factor | 74 | 155 | 0.000 |
| 2 | g7203.t4 | PANTHER | PTHR11849:SF187 | ETS-DOMAIN LACKING | 49 | 154 | 0.000 |
| 3 | g7203.t4 | PANTHER | PTHR11849 | ETS | 49 | 154 | 0.000 |
| 1 | g7203.t4 | Pfam | PF02198 | Sterile alpha motif (SAM)/Pointed domain | 79 | 144 | 0.000 |
| 7 | g7203.t4 | ProSiteProfiles | PS51433 | Pointed (PNT) domain profile. | 66 | 152 | 33.286 |
| 5 | g7203.t4 | SMART | SM00251 | SAM2_3 | 68 | 152 | 0.000 |
| 4 | g7203.t4 | SUPERFAMILY | SSF47769 | SAM/Pointed domain | 46 | 151 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0043565 | sequence-specific DNA binding | MF |
KEGG
Orthology
- This transcript has been annotated with K20232 (ETS-domain lacking)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
