General information for g7211.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trafficking protein particle complex subunit 3.
Parent gene
- The parent gene g7211 is located on chr_2: 22108115..22109004 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7211 | g7211.t1 | isoform | g7211.t1 | 22108115 | 22108622 |
| chr_2 | g7211 | g7211.t1 | exon | g7211.t1.exon1 | 22108115 | 22108275 |
| chr_2 | g7211 | g7211.t1 | cds | g7211.t1.CDS1 | 22108115 | 22108275 |
| chr_2 | g7211 | g7211.t1 | exon | g7211.t1.exon2 | 22108334 | 22108622 |
| chr_2 | g7211 | g7211.t1 | cds | g7211.t1.CDS2 | 22108334 | 22108622 |
| chr_2 | g7211 | g7211.t1 | TTS | g7211.t1 | 22108657 | 22108657 |
| chr_2 | g7211 | g7211.t1 | TSS | g7211.t1 | NA | NA |
Sequences
>g7211.t1 Gene=g7211 Length=450
ATGCTGAGAGATTTTGAAAATGTGGAAGATGTTAATAAGCAATTAGAACGACTTGGTTAT
AATATGGGAATGAGACTAATTGAAGACTATCTCTCAAAAACTAATTCATCGCGATGTTTA
GATATGCGCGACACTGCTGAAAAAATTCAATCAGCATTTCGGATGTATTTAAATGTGCAG
CCAACTATAACCAATTGGGCTCCCTCAGCAGACGAGTTTTCGCTTGTTTTTGATAATAAT
CCTTTAACAGAATTCGTTGAATTACCATCGGACTTGAACACTAGTCTGCGTTATTGCGGA
ATCATAAACGGTTGCATTCGAGGTGCTCTCGAAATGGTACAACTAGAAGTTCAATGTTGG
TTTGTTCAAGATCAATTAAAAGGAGATTCTACAACAGAGATTCGAGTAAAATTTATCCGA
AAAATGGATGATACATTACCAGAAGATTAA
>g7211.t1 Gene=g7211 Length=149
MLRDFENVEDVNKQLERLGYNMGMRLIEDYLSKTNSSRCLDMRDTAEKIQSAFRMYLNVQ
PTITNWAPSADEFSLVFDNNPLTEFVELPSDLNTSLRYCGIINGCIRGALEMVQLEVQCW
FVQDQLKGDSTTEIRVKFIRKMDDTLPED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7211.t1 | CDD | cd14942 | TRAPPC3_bet3 | 1 | 140 | 0 |
| 4 | g7211.t1 | Gene3D | G3DSA:3.30.1380.20 | Trafficking protein particle complex subunit 3 | 1 | 149 | 0 |
| 2 | g7211.t1 | PANTHER | PTHR13048 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 | 1 | 148 | 0 |
| 5 | g7211.t1 | PIRSF | PIRSF018293 | TRAPP_1_Bet3 | 1 | 149 | 0 |
| 1 | g7211.t1 | Pfam | PF04051 | Transport protein particle (TRAPP) component | 2 | 137 | 0 |
| 3 | g7211.t1 | SUPERFAMILY | SSF111126 | Ligand-binding domain in the NO signalling and Golgi transport | 2 | 140 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0048193 | Golgi vesicle transport | BP |
| GO:0030008 | TRAPP complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
