General information for g7215.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as THO complex subunit 5-like protein.
Parent gene
- The parent gene g7215 is located on chr_2: 22126268..22130707 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7215 | g7215.t1 | TTS | g7215.t1 | 22124040 | 22124040 |
| chr_2 | g7215 | g7215.t1 | isoform | g7215.t1 | 22124104 | 22126268 |
| chr_2 | g7215 | g7215.t1 | exon | g7215.t1.exon1 | 22124104 | 22125918 |
| chr_2 | g7215 | g7215.t1 | cds | g7215.t1.CDS1 | 22124104 | 22125918 |
| chr_2 | g7215 | g7215.t1 | exon | g7215.t1.exon2 | 22125979 | 22126113 |
| chr_2 | g7215 | g7215.t1 | cds | g7215.t1.CDS2 | 22125979 | 22126113 |
| chr_2 | g7215 | g7215.t1 | exon | g7215.t1.exon3 | 22126173 | 22126268 |
| chr_2 | g7215 | g7215.t1 | cds | g7215.t1.CDS3 | 22126173 | 22126268 |
| chr_2 | g7215 | g7215.t1 | TSS | g7215.t1 | 22126324 | 22126324 |
Sequences
>g7215.t1 Gene=g7215 Length=2046
ATGGTCAGTGATAGCAAAAAACGTAAAACTTCATCAACATCAACACCTACTAAAAATTCT
GCGCCCGTGGCACTTACAAAAGAAGAAGTTTATGATAATGCCATAGCTTTTGAAGAGAAT
GAAGAAAGCCATTTTAATCGAAATTTGTTTAAAGATTGTTTTAGCGAACTTAAGAAAATA
ATCGAAGAAGTCAAAATTCTTAAGGCATCATCATTATCTTCAGAAGAAGATACGAAAAAA
AAAATAGCTGAAAAACGTATTCAAGGATCAATGTTAATAGTAAAATTAAAGAAACTAAAT
CGGCTCGATAAATTACGCTTGATTAATTGTCGTGAAATTCTTCAAAAAGAAAAACTTCAT
GCAGACAGCAATCGTCTTAAATTACAAAACTTGATATATGAAGCTGACCATCTTAAAAAA
GAAATAAATAAGTGCTTCTCTTTCAAAAGTGAAGATGAAGATATTGAATTAGTTCCAATC
GAAGAATTCATACAAAATGCTCCAGAAGAATCACGTACAAAAGAGATTTTGGAAGATGAA
CATTCATTAAGAAAGGCTCGATTGGGATTTGAGTTGCAACAACGAAAAGAATATGCTCAA
CAATGTAAGGATCTTGAAAAGAAGAAAGAAACTATTGGAGAACAATCTATTGAAGTTAAA
AAAAATTTGGATTCAATTTATCCATGCTTGAAAGAAGTAATGAAATCAACAAGACCTATA
CAACAAATTTTAAATATGCCTTTTGAAAAAGAATGGGAAATTCAAAAGCTCGTTCGTCTA
CTGCCTCAACCACTTTATATGGCTTACACAAAATTACTTGCATATGCTGAAGTTATTGAC
AAACGTTTAACAGTGTCAATTGAAGGTGATGAAGAAGAAGCACGAGTTACTGAAACTGAA
TTGAAACAAACAAAAGAAGAAATTTCAGAGGGCGAAGAAACTGATAATGAAGAAAATGAT
TTTGATGATGGTATAAATCACCGAAAAATCAAGCGTCGTCAATCTCAAATTGAATCCTTA
AATCAAAAACGAGCCCAACTTTTTAATCATTATCCATTAAGTGTAAAATTCAATTTGAAT
ATGAAAGATACAGATGACGCCTTCTCAATTATTCTCAACTATCTTCCTGAACTCGGATTT
ATTACTGTTCAAGGAAATTTTTGTATCGATTCTAGTGAATCCGTTACAGCCGGTGATGTT
ATTACTCAAGAACGTGTATTGAGTAGTTTATATGAAGATGATTATGGTGATATGAGTCCT
AATCCAAAGACAGCATTTCAATTGCAAAATGTTCAATTAAATCCAATAGATTTAATTCAA
ACATTGAATGATAAAAAACTTGGAAGACCCTATAAATGGGCACAAAGATTATGTGGTGTT
ATTTTTTCTGATCATTATCAAAATTTCAATCAATCTCAAAAATTATGTGAAGAAACTGTT
CCTGATCTTATACGACAAATAAGGAAAAGAATTAAGGCTCGTATGTTGCTGTTTAAACAA
ATTCGAGTGCTCGAATCTAACAAAATTGAGAGTATCAGCTCATACAAAGTATCATCAGTC
CTTCAGTTATTTGTTTCACTGACATTTGAGGAGTATTTAAATCAACCATGCACGAGTAGA
TTTATTGAAGAAGGTATAGTCAATGAAAATGATGTTTTTTATTGTGCTATTTGTACACGT
GGTTCAGCAAAACTTGAATGTTATATATGCATTCCATCACATTTTCCCTGCGAAGCTCCT
CTTTTCTCAATTAGCATGAATTGGAATGATAATAAACATAACGCAGAAACCTCTTTTCAT
ATTCGAGAAATTGAATCTTTCATAAATTCAATTGAAAATACTAAACCAGAAGAAATTTTA
ATGCAACAAGTACAACGAGCAATGACTTCTTTTGACATCTACCTAGAATCAGAATCCACT
CAACATATTGAAAATTCAGAATTTAAACAAGAAAAGAACTTTTCAAGAAGTTTCAAACGC
AGAGTAAGATCTCGTCCATATCTTGCAAAAACAAATATGAACCTAACTTCATTTACTCAC
TTATAA
>g7215.t1 Gene=g7215 Length=681
MVSDSKKRKTSSTSTPTKNSAPVALTKEEVYDNAIAFEENEESHFNRNLFKDCFSELKKI
IEEVKILKASSLSSEEDTKKKIAEKRIQGSMLIVKLKKLNRLDKLRLINCREILQKEKLH
ADSNRLKLQNLIYEADHLKKEINKCFSFKSEDEDIELVPIEEFIQNAPEESRTKEILEDE
HSLRKARLGFELQQRKEYAQQCKDLEKKKETIGEQSIEVKKNLDSIYPCLKEVMKSTRPI
QQILNMPFEKEWEIQKLVRLLPQPLYMAYTKLLAYAEVIDKRLTVSIEGDEEEARVTETE
LKQTKEEISEGEETDNEENDFDDGINHRKIKRRQSQIESLNQKRAQLFNHYPLSVKFNLN
MKDTDDAFSIILNYLPELGFITVQGNFCIDSSESVTAGDVITQERVLSSLYEDDYGDMSP
NPKTAFQLQNVQLNPIDLIQTLNDKKLGRPYKWAQRLCGVIFSDHYQNFNQSQKLCEETV
PDLIRQIRKRIKARMLLFKQIRVLESNKIESISSYKVSSVLQLFVSLTFEEYLNQPCTSR
FIEEGIVNENDVFYCAICTRGSAKLECYICIPSHFPCEAPLFSISMNWNDNKHNAETSFH
IREIESFINSIENTKPEEILMQQVQRAMTSFDIYLESESTQHIENSEFKQEKNFSRSFKR
RVRSRPYLAKTNMNLTSFTHL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7215.t1 | Coils | Coil | Coil | 188 | 215 | - |
| 8 | g7215.t1 | Coils | Coil | Coil | 287 | 314 | - |
| 5 | g7215.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - |
| 7 | g7215.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - |
| 4 | g7215.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 327 | - |
| 6 | g7215.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 309 | - |
| 2 | g7215.t1 | PANTHER | PTHR13375:SF3 | THO COMPLEX SUBUNIT 5 HOMOLOG | 37 | 672 | 1.7E-133 |
| 3 | g7215.t1 | PANTHER | PTHR13375 | FMS INTERACTING PROTEIN | 37 | 672 | 1.7E-133 |
| 1 | g7215.t1 | Pfam | PF09766 | Fms-interacting protein/Thoc5 | 95 | 460 | 7.9E-99 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K13174 (THO complex subunit 5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
