General information for g7215.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as THO complex subunit 5-like protein.
Parent gene
- The parent gene g7215 is located on chr_2: 22126268..22130707 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7215 | g7215.t3 | TTS | g7215.t3 | 22124040 | 22124040 |
| chr_2 | g7215 | g7215.t3 | isoform | g7215.t3 | 22124104 | 22126268 |
| chr_2 | g7215 | g7215.t3 | exon | g7215.t3.exon1 | 22124104 | 22125918 |
| chr_2 | g7215 | g7215.t3 | cds | g7215.t3.CDS1 | 22124104 | 22125879 |
| chr_2 | g7215 | g7215.t3 | exon | g7215.t3.exon2 | 22125979 | 22126055 |
| chr_2 | g7215 | g7215.t3 | exon | g7215.t3.exon3 | 22126173 | 22126268 |
| chr_2 | g7215 | g7215.t3 | TSS | g7215.t3 | 22126324 | 22126324 |
Sequences
>g7215.t3 Gene=g7215 Length=1988
ATGGTCAGTGATAGCAAAAAACGTAAAACTTCATCAACATCAACACCTACTAAAAATTCT
GCGCCCGTGGCACTTACAAAAGAAGAAGTTTATGATATTGTTTTAGCGAACTTAAGAAAA
TAATCGAAGAAGTCAAAATTCTTAAGGCATCATCATTATCTTCAGAAGAAGATACGAAAA
AAAAAATAGCTGAAAAACGTATTCAAGGATCAATGTTAATAGTAAAATTAAAGAAACTAA
ATCGGCTCGATAAATTACGCTTGATTAATTGTCGTGAAATTCTTCAAAAAGAAAAACTTC
ATGCAGACAGCAATCGTCTTAAATTACAAAACTTGATATATGAAGCTGACCATCTTAAAA
AAGAAATAAATAAGTGCTTCTCTTTCAAAAGTGAAGATGAAGATATTGAATTAGTTCCAA
TCGAAGAATTCATACAAAATGCTCCAGAAGAATCACGTACAAAAGAGATTTTGGAAGATG
AACATTCATTAAGAAAGGCTCGATTGGGATTTGAGTTGCAACAACGAAAAGAATATGCTC
AACAATGTAAGGATCTTGAAAAGAAGAAAGAAACTATTGGAGAACAATCTATTGAAGTTA
AAAAAAATTTGGATTCAATTTATCCATGCTTGAAAGAAGTAATGAAATCAACAAGACCTA
TACAACAAATTTTAAATATGCCTTTTGAAAAAGAATGGGAAATTCAAAAGCTCGTTCGTC
TACTGCCTCAACCACTTTATATGGCTTACACAAAATTACTTGCATATGCTGAAGTTATTG
ACAAACGTTTAACAGTGTCAATTGAAGGTGATGAAGAAGAAGCACGAGTTACTGAAACTG
AATTGAAACAAACAAAAGAAGAAATTTCAGAGGGCGAAGAAACTGATAATGAAGAAAATG
ATTTTGATGATGGTATAAATCACCGAAAAATCAAGCGTCGTCAATCTCAAATTGAATCCT
TAAATCAAAAACGAGCCCAACTTTTTAATCATTATCCATTAAGTGTAAAATTCAATTTGA
ATATGAAAGATACAGATGACGCCTTCTCAATTATTCTCAACTATCTTCCTGAACTCGGAT
TTATTACTGTTCAAGGAAATTTTTGTATCGATTCTAGTGAATCCGTTACAGCCGGTGATG
TTATTACTCAAGAACGTGTATTGAGTAGTTTATATGAAGATGATTATGGTGATATGAGTC
CTAATCCAAAGACAGCATTTCAATTGCAAAATGTTCAATTAAATCCAATAGATTTAATTC
AAACATTGAATGATAAAAAACTTGGAAGACCCTATAAATGGGCACAAAGATTATGTGGTG
TTATTTTTTCTGATCATTATCAAAATTTCAATCAATCTCAAAAATTATGTGAAGAAACTG
TTCCTGATCTTATACGACAAATAAGGAAAAGAATTAAGGCTCGTATGTTGCTGTTTAAAC
AAATTCGAGTGCTCGAATCTAACAAAATTGAGAGTATCAGCTCATACAAAGTATCATCAG
TCCTTCAGTTATTTGTTTCACTGACATTTGAGGAGTATTTAAATCAACCATGCACGAGTA
GATTTATTGAAGAAGGTATAGTCAATGAAAATGATGTTTTTTATTGTGCTATTTGTACAC
GTGGTTCAGCAAAACTTGAATGTTATATATGCATTCCATCACATTTTCCCTGCGAAGCTC
CTCTTTTCTCAATTAGCATGAATTGGAATGATAATAAACATAACGCAGAAACCTCTTTTC
ATATTCGAGAAATTGAATCTTTCATAAATTCAATTGAAAATACTAAACCAGAAGAAATTT
TAATGCAACAAGTACAACGAGCAATGACTTCTTTTGACATCTACCTAGAATCAGAATCCA
CTCAACATATTGAAAATTCAGAATTTAAACAAGAAAAGAACTTTTCAAGAAGTTTCAAAC
GCAGAGTAAGATCTCGTCCATATCTTGCAAAAACAAATATGAACCTAACTTCATTTACTC
ACTTATAA
>g7215.t3 Gene=g7215 Length=591
MLIVKLKKLNRLDKLRLINCREILQKEKLHADSNRLKLQNLIYEADHLKKEINKCFSFKS
EDEDIELVPIEEFIQNAPEESRTKEILEDEHSLRKARLGFELQQRKEYAQQCKDLEKKKE
TIGEQSIEVKKNLDSIYPCLKEVMKSTRPIQQILNMPFEKEWEIQKLVRLLPQPLYMAYT
KLLAYAEVIDKRLTVSIEGDEEEARVTETELKQTKEEISEGEETDNEENDFDDGINHRKI
KRRQSQIESLNQKRAQLFNHYPLSVKFNLNMKDTDDAFSIILNYLPELGFITVQGNFCID
SSESVTAGDVITQERVLSSLYEDDYGDMSPNPKTAFQLQNVQLNPIDLIQTLNDKKLGRP
YKWAQRLCGVIFSDHYQNFNQSQKLCEETVPDLIRQIRKRIKARMLLFKQIRVLESNKIE
SISSYKVSSVLQLFVSLTFEEYLNQPCTSRFIEEGIVNENDVFYCAICTRGSAKLECYIC
IPSHFPCEAPLFSISMNWNDNKHNAETSFHIREIESFINSIENTKPEEILMQQVQRAMTS
FDIYLESESTQHIENSEFKQEKNFSRSFKRRVRSRPYLAKTNMNLTSFTHL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7215.t3 | Coils | Coil | Coil | 98 | 125 | - |
| 6 | g7215.t3 | Coils | Coil | Coil | 197 | 224 | - |
| 4 | g7215.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 219 | - |
| 5 | g7215.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 237 | - |
| 2 | g7215.t3 | PANTHER | PTHR13375:SF3 | THO COMPLEX SUBUNIT 5 HOMOLOG | 1 | 582 | 8.2E-126 |
| 3 | g7215.t3 | PANTHER | PTHR13375 | FMS INTERACTING PROTEIN | 1 | 582 | 8.2E-126 |
| 1 | g7215.t3 | Pfam | PF09766 | Fms-interacting protein/Thoc5 | 5 | 370 | 5.3E-99 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
