Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein lethal(2)essential for life.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7236 g7236.t1 TTS g7236.t1 22286148 22286148
chr_2 g7236 g7236.t1 isoform g7236.t1 22286242 22286923
chr_2 g7236 g7236.t1 exon g7236.t1.exon1 22286242 22286507
chr_2 g7236 g7236.t1 cds g7236.t1.CDS1 22286242 22286507
chr_2 g7236 g7236.t1 exon g7236.t1.exon2 22286584 22286923
chr_2 g7236 g7236.t1 cds g7236.t1.CDS2 22286584 22286923
chr_2 g7236 g7236.t1 TSS g7236.t1 22287007 22287007

Sequences

>g7236.t1 Gene=g7236 Length=606
ATGTCAAGAGTTCCATTAACTTTTCGTGACTGGTGGGATGATTTTGGTGATGACTATTTT
GACTCCTTTCGTCGTCCTCGAACATCACGTCTCATCGATCAGCACTTTGGGACTGCTTTG
AGACGAAACGACCTATTGAGTTCACTCGCCAACACACACATTTCAAATACGTCACGAACA
ACACCGTATTATCGTCCCTGGAGCACACCACTTGCAAAAGCTGATAGCGGATCCACTGTA
AACGTTGAAAAGGACAAATTCCAAATTATTCTGGATGTACAACAGTTTGCTCCAAATGAA
ATTTCTGTCAAAACGACTGACAAATTTATTATCATTGAAGGTAAACATGATGAGAAGCAA
GACGAACACGGATTTGTCTCTAGACACTTTACTCGCAAGTATATGCTTCCAAGCAATTAC
AAGAGTGATAATGTGACATCAACATTGTCATCCGATGGAATTTTAACAATATCAGCTATA
CCACCAGAGCCACAACCTATCAATCAAGAGCGTTCTGTACCAATTACTCATGTTGGCCCA
TCACGCGTCGAAAGTACACAAACATCAACACAAGAATCACAACCGAAAATTGAACAAGTT
AATTAA

>g7236.t1 Gene=g7236 Length=201
MSRVPLTFRDWWDDFGDDYFDSFRRPRTSRLIDQHFGTALRRNDLLSSLANTHISNTSRT
TPYYRPWSTPLAKADSGSTVNVEKDKFQIILDVQQFAPNEISVKTTDKFIIIEGKHDEKQ
DEHGFVSRHFTRKYMLPSNYKSDNVTSTLSSDGILTISAIPPEPQPINQERSVPITHVGP
SRVESTQTSTQESQPKIEQVN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7236.t1 CDD cd06526 metazoan_ACD 79 159 1.13082E-38
11 g7236.t1 Gene3D G3DSA:2.60.40.790 - 56 196 1.7E-30
14 g7236.t1 MobiDBLite mobidb-lite consensus disorder prediction 160 201 -
15 g7236.t1 MobiDBLite mobidb-lite consensus disorder prediction 162 201 -
2 g7236.t1 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 1 190 2.9E-52
3 g7236.t1 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 1 190 2.9E-52
12 g7236.t1 PIRSF PIRSF036514 Sm_HSP_B1 3 201 7.4E-55
8 g7236.t1 PRINTS PR00299 Alpha crystallin signature 27 39 2.1E-24
5 g7236.t1 PRINTS PR00299 Alpha crystallin signature 81 101 2.1E-24
6 g7236.t1 PRINTS PR00299 Alpha crystallin signature 103 116 2.1E-24
9 g7236.t1 PRINTS PR00299 Alpha crystallin signature 118 137 2.1E-24
4 g7236.t1 PRINTS PR00299 Alpha crystallin signature 140 161 2.1E-24
7 g7236.t1 PRINTS PR00299 Alpha crystallin signature 170 185 2.1E-24
1 g7236.t1 Pfam PF00011 Hsp20/alpha crystallin family 81 175 3.3E-26
16 g7236.t1 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 69 176 22.303
10 g7236.t1 SUPERFAMILY SSF49764 HSP20-like chaperones 83 165 2.02E-13

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed