General information for g7236.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein lethal(2)essential for life.
Parent gene
- The parent gene g7236 is located on chr_2: 22286242..22286923 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7236 | g7236.t4 | TTS | g7236.t4 | 22286148 | 22286148 |
| chr_2 | g7236 | g7236.t4 | isoform | g7236.t4 | 22286242 | 22286923 |
| chr_2 | g7236 | g7236.t4 | exon | g7236.t4.exon1 | 22286242 | 22286507 |
| chr_2 | g7236 | g7236.t4 | cds | g7236.t4.CDS1 | 22286412 | 22286507 |
| chr_2 | g7236 | g7236.t4 | exon | g7236.t4.exon2 | 22286618 | 22286923 |
| chr_2 | g7236 | g7236.t4 | cds | g7236.t4.CDS2 | 22286618 | 22286923 |
| chr_2 | g7236 | g7236.t4 | TSS | g7236.t4 | 22287007 | 22287007 |
Sequences
>g7236.t4 Gene=g7236 Length=572
ATGTCAAGAGTTCCATTAACTTTTCGTGACTGGTGGGATGATTTTGGTGATGACTATTTT
GACTCCTTTCGTCGTCCTCGAACATCACGTCTCATCGATCAGCACTTTGGGACTGCTTTG
AGACGAAACGACCTATTGAGTTCACTCGCCAACACACACATTTCAAATACGTCACGAACA
ACACCGTATTATCGTCCCTGGAGCACACCACTTGCAAAAGCTGATAGCGGATCCACTGTA
AACGTTGAAAAGGACAAATTCCAAATTATTCTGGATGTACAACAGTTTGCTCCAAATGAA
ATTTCTGTAAACATGATGAGAAGCAAGACGAACACGGATTTGTCTCTAGACACTTTACTC
GCAAGTATATGCTTCCAAGCAATTACAAGAGTGATAATGTGACATCAACATTGTCATCCG
ATGGAATTTTAACAATATCAGCTATACCACCAGAGCCACAACCTATCAATCAAGAGCGTT
CTGTACCAATTACTCATGTTGGCCCATCACGCGTCGAAAGTACACAAACATCAACACAAG
AATCACAACCGAAAATTGAACAAGTTAATTAA
>g7236.t4 Gene=g7236 Length=133
MSRVPLTFRDWWDDFGDDYFDSFRRPRTSRLIDQHFGTALRRNDLLSSLANTHISNTSRT
TPYYRPWSTPLAKADSGSTVNVEKDKFQIILDVQQFAPNEISVNMMRSKTNTDLSLDTLL
ASICFQAITRVIM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7236.t4 | PRINTS | PR00299 | Alpha crystallin signature | 27 | 39 | 4.4e-05 |
| 1 | g7236.t4 | PRINTS | PR00299 | Alpha crystallin signature | 81 | 101 | 4.4e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed