Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein lethal(2)essential for life.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7236 g7236.t5 TTS g7236.t5 22286148 22286148
chr_2 g7236 g7236.t5 isoform g7236.t5 22286242 22286923
chr_2 g7236 g7236.t5 exon g7236.t5.exon1 22286242 22286464
chr_2 g7236 g7236.t5 cds g7236.t5.CDS1 22286242 22286464
chr_2 g7236 g7236.t5 exon g7236.t5.exon2 22286580 22286923
chr_2 g7236 g7236.t5 cds g7236.t5.CDS2 22286580 22286923
chr_2 g7236 g7236.t5 TSS g7236.t5 22287007 22287007

Sequences

>g7236.t5 Gene=g7236 Length=567
ATGTCAAGAGTTCCATTAACTTTTCGTGACTGGTGGGATGATTTTGGTGATGACTATTTT
GACTCCTTTCGTCGTCCTCGAACATCACGTCTCATCGATCAGCACTTTGGGACTGCTTTG
AGACGAAACGACCTATTGAGTTCACTCGCCAACACACACATTTCAAATACGTCACGAACA
ACACCGTATTATCGTCCCTGGAGCACACCACTTGCAAAAGCTGATAGCGGATCCACTGTA
AACGTTGAAAAGGACAAATTCCAAATTATTCTGGATGTACAACAGTTTGCTCCAAATGAA
ATTTCTGTCAAAACGACTGACAAATTTATTATCATTGAAGGTGGACACTTTACTCGCAAG
TATATGCTTCCAAGCAATTACAAGAGTGATAATGTGACATCAACATTGTCATCCGATGGA
ATTTTAACAATATCAGCTATACCACCAGAGCCACAACCTATCAATCAAGAGCGTTCTGTA
CCAATTACTCATGTTGGCCCATCACGCGTCGAAAGTACACAAACATCAACACAAGAATCA
CAACCGAAAATTGAACAAGTTAATTAA

>g7236.t5 Gene=g7236 Length=188
MSRVPLTFRDWWDDFGDDYFDSFRRPRTSRLIDQHFGTALRRNDLLSSLANTHISNTSRT
TPYYRPWSTPLAKADSGSTVNVEKDKFQIILDVQQFAPNEISVKTTDKFIIIEGGHFTRK
YMLPSNYKSDNVTSTLSSDGILTISAIPPEPQPINQERSVPITHVGPSRVESTQTSTQES
QPKIEQVN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g7236.t5 CDD cd06526 metazoan_ACD 79 146 1.97163E-25
8 g7236.t5 Gene3D G3DSA:2.60.40.790 - 63 183 3.5E-18
11 g7236.t5 MobiDBLite mobidb-lite consensus disorder prediction 147 188 -
12 g7236.t5 MobiDBLite mobidb-lite consensus disorder prediction 149 188 -
2 g7236.t5 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 1 177 1.1E-35
3 g7236.t5 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 1 177 1.1E-35
9 g7236.t5 PIRSF PIRSF036514 Sm_HSP_B1 3 188 2.7E-37
6 g7236.t5 PRINTS PR00299 Alpha crystallin signature 27 39 5.2E-8
4 g7236.t5 PRINTS PR00299 Alpha crystallin signature 81 101 5.2E-8
5 g7236.t5 PRINTS PR00299 Alpha crystallin signature 103 116 5.2E-8
1 g7236.t5 Pfam PF00011 Hsp20/alpha crystallin family 115 162 1.6E-10
13 g7236.t5 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 69 163 11.701
7 g7236.t5 SUPERFAMILY SSF49764 HSP20-like chaperones 83 152 1.46E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed