General information for g7247.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Importin-7.
Parent gene
- The parent gene g7247 is located on chr_2: 22344023..22345479 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7247 | g7247.t10 | TTS | g7247.t10 | 22343224 | 22343224 |
| chr_2 | g7247 | g7247.t10 | isoform | g7247.t10 | 22344023 | 22345394 |
| chr_2 | g7247 | g7247.t10 | exon | g7247.t10.exon1 | 22344023 | 22345394 |
| chr_2 | g7247 | g7247.t10 | cds | g7247.t10.CDS1 | 22344023 | 22344511 |
| chr_2 | g7247 | g7247.t10 | TSS | g7247.t10 | 22345552 | 22345552 |
Sequences
>g7247.t10 Gene=g7247 Length=1372
TAAAAAAAGTGAATTTATTTTCGATAAAAAAGGGGAATCAAAGCGAACACATGGATATTT
TTGCGCTCAAACAGAAAAAAAGCAGTAATAACTCATCAAACTCGAATGAAAATGAAACGG
CAAATTGCATAGTATGCAACTCTTTGCTATCTCTATCGTATACATTTACGAATCAAATGA
ATATTTTTGACCTTGAAATCTTGAATCGTTCATTGTCCTTTAGTGTGAGGGAGTGTGAAG
CAATTTCCAAGAACACAACGCTTTTTCTATTCGCGAAAATTCGCTTCAATATTCACTTTC
GGTTCTTGTATATACAATGAATAATATTTGCCAAAATTGATAAAACACATGTTTTTTTTT
AAACGAAATTGAACTTTTACTCGTGCCAATGGAATGTTGCCGTAAATTTCAAATTGTGAA
ATTGAGTCACGATATGAAAATAGAAAAATATCATACTTCCACGTAATCCAGTAGCTGCTT
GTTTTTAAATTATCGTCCTTGCTAATATAAAGTTCTTTAGAACTTTAAACATTCGTCATG
ATTGATTCATATTGTTTTTGCATAATCAAAGCATGTAGTTAAATTTAGATTCATTTATTA
ATTATAAAGAAAATATTGATCGATATATTACTCTGTATTTTGATGTTTCATGTCAAAAAA
TTAAAAAAACAAAATGATAATCAATTTTCAATTGAAACATGCTATAAAACAAAATGATAC
TAAAAATGCCATAACCTCGCTTGCAAACTAAAATAATTGTAAATCAATTTCCTCTCATAC
CCTAGCTTTTTATTTCACTCGATTATGTTGACTAGCTTTGATTTATTTTCATTTTTAGGT
GCATAAAATTATCGGATTTGTGCCGACTTTATTGCAAGTTGTAATGCAAGTTGATGTCGA
TATGCCAGTACGTCAAGCAGGTGCCGTATATTTAAAGAATACAATCACAAGTAGTTGGGA
AGATCGAGAAGTAGAGGCAGGACAACCACTGATTTTTTCAATACATGAACAAGATAGAGC
AATGATAAGAGATAGTATTGTTGATGCGATAGTTGTAGCACCTGATCCAATAAAAGTACA
ACTTTGTGTATGCATTAACAATATCATTAAACATGATTTTCCACATAAATGGACACAAGT
TGTCGATAAAATTAGTATTTATCTTCAAAACAACGATCCAAATGGTTGGAATGGTGCATT
ATTATGTCTATATCAATTAGTCAAAAATTATGAATATAAAAAATCAAATGAGCGCGCACC
TCTTACTGAAGCAATGAATCTTTTATTGCCAATGATTTATAATCTTATGATAAATCTTCT
TGGACACGATCCACTAAATGACAATGATCAATTTGTGCTGCTACAAAAGTTG
>g7247.t10 Gene=g7247 Length=163
MQVDVDMPVRQAGAVYLKNTITSSWEDREVEAGQPLIFSIHEQDRAMIRDSIVDAIVVAP
DPIKVQLCVCINNIIKHDFPHKWTQVVDKISIYLQNNDPNGWNGALLCLYQLVKNYEYKK
SNERAPLTEAMNLLLPMIYNLMINLLGHDPLNDNDQFVLLQKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7247.t10 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 163 | 0.000 |
| 2 | g7247.t10 | PANTHER | PTHR10997 | IMPORTIN-7, 8, 11 | 3 | 162 | 0.000 |
| 3 | g7247.t10 | PANTHER | PTHR10997:SF26 | IMPORTIN-8 | 3 | 162 | 0.000 |
| 1 | g7247.t10 | Pfam | PF03810 | Importin-beta N-terminal domain | 4 | 57 | 0.000 |
| 6 | g7247.t10 | ProSiteProfiles | PS50166 | Importin-beta N-terminal domain profile. | 1 | 58 | 13.286 |
| 4 | g7247.t10 | SUPERFAMILY | SSF48371 | ARM repeat | 4 | 152 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031267 | small GTPase binding | MF |
| GO:0006886 | intracellular protein transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
