General information for g7247.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Importin-7.
Parent gene
- The parent gene g7247 is located on chr_2: 22344023..22345479 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7247 | g7247.t5 | isoform | g7247.t5 | 22340195 | 22343559 |
| chr_2 | g7247 | g7247.t5 | exon | g7247.t5.exon1 | 22340195 | 22341203 |
| chr_2 | g7247 | g7247.t5 | TTS | g7247.t5 | 22340291 | 22340291 |
| chr_2 | g7247 | g7247.t5 | cds | g7247.t5.CDS1 | 22341139 | 22341203 |
| chr_2 | g7247 | g7247.t5 | exon | g7247.t5.exon2 | 22341265 | 22341408 |
| chr_2 | g7247 | g7247.t5 | cds | g7247.t5.CDS2 | 22341265 | 22341408 |
| chr_2 | g7247 | g7247.t5 | exon | g7247.t5.exon3 | 22341465 | 22341542 |
| chr_2 | g7247 | g7247.t5 | cds | g7247.t5.CDS3 | 22341465 | 22341542 |
| chr_2 | g7247 | g7247.t5 | exon | g7247.t5.exon4 | 22341611 | 22341674 |
| chr_2 | g7247 | g7247.t5 | cds | g7247.t5.CDS4 | 22341611 | 22341674 |
| chr_2 | g7247 | g7247.t5 | exon | g7247.t5.exon5 | 22341741 | 22343559 |
| chr_2 | g7247 | g7247.t5 | cds | g7247.t5.CDS5 | 22341741 | 22343483 |
| chr_2 | g7247 | g7247.t5 | TSS | g7247.t5 | NA | NA |
Sequences
>g7247.t5 Gene=g7247 Length=3114
TGTCTCACATTCTTATTCATGGAAAATCATCAAACCACATGCCATTGCACTTATTCAAGA
CGTCATTTTTCCGCTTATGTCATTTTCGGAAGCTGATGAAGAACTTTGGGATATGGATCC
AGTTGAGTTTATAAGACAAAAGTTTGATGTATTTGATGATATTTCATCACCAGTTCCAGC
AGCCGAAACACTTCTTCATAGTTTATGTAAAACGAGGAAAGGAATTTTGAATTCAGTTAT
GGCCGCATTCTTTCAAATCATCAATAATCCAAACATAACACCGAAAGAAAAGGATGGTGC
ATTACATATGATTGGAAGTTTAAGTGATGTTTTACCAAAGAAAAAAGTTTTCAAAAATCA
AGTTGAACAATTGCTAGTAACGTATGTTTTCCCAGGCTTTCAAAGTCCCCAAGGTCATTT
ACGAGCTCGTTCTTGTTGGGTTCTTCATAGTTTCAGTGAGATAACAATTAAAAATCCTGA
AAACTTGGCCAAAATTATGCAATTGTCTACGAATGCCCTTCTTACTGATCCTGACTTACC
TGTGAAAGTTGAAGCTGCTATTTGTATTCAAATGTTTTTAGTTTCTCAACCAGAATCAAG
CAAATATATTGAAACACAGGTGAAAAATATCACTATTGAATTATTAAAAATTATTCGTGA
AACAGAAAATGAGGACTTGACAAATGTCATGCAAAAAATCGTATGTTCGTTTACTGATCA
ATTAGTACCTATTGCAGTAGAAATTTGTCAGCATTTAGCAGAAACATTTAGACAAGTAGT
CGAAAGTGATGATTCAAGTGATGATCGTGCAATCACGGCCATGGGATTACTCAATACAAT
GGAAACTCTTTTGTCAGTAATGGAAGAAAAGCCAGAAGTTATTGCTAGCTTACATCCGAT
TGTATTGCAAGTAATTTGCCACATTTTACAAAACAATATTAATGAATTTTATGAAGAGGC
CTTTTCGCTCATCTATGATCTAACTTCAAAAACAATTTCTCAAGATTTATGGAAACTTTT
AGAATTAATTTATGCAATGTTTGAAAAAGATGGAATCGATTATTTTCTCGATATGATGCC
AACACTCTATAACTACGTTACAGTCGATACAAATGCCTTCTTATCTAATCAAAATCATGT
TTTAGCGTTGTTCAATATGTGTAAAACAATACTCAATAGCACAGATGTTACGGAAGAAGC
TGAATGTAATGCAGCTAAATTATTAGAAGTTATGATTCTTCAATGTCGTGGACGTATCAA
TGAATGTATTCCAACATTTGTAGAATTGGCTCTAGGTCGTTTGATAAGAGAAGTTAAAAC
ATCAGAATTACGCACAATGTGTCTTCAAGTCGTTATTGCAGCGCTTTACACAAATACAGC
ACCACTTTTAGAAATGCTTTCAAAGCAGGTCATGCCAAACACTAACGATTCAATTCTGTC
ACACTTTGTCAAACAATGGATTCATGATACTGATTGCTTCTTGGGCATTCATGATAGAAA
ATTATGGGTAATTGGGATGTGTACACTCATAACACTTGGCAATGCTAAACCACAAGTTTT
AAGTGAAGTCTCGAATGATATTATTCCCTCATTAATTTTAATATTTGATGGTTTAAAAAG
GGCATATGAAGCACGTGCTGAAGATGAAGAAGAAGAGGAAGAAAGTGATGAAGATGAAGA
ACTTGATGACTGTGAAGAGGGTATCTCTAGTGATGAAGATGAAATGAATGAGCTCGATAA
TTCATATATGGAGCGTGTTGCAGAATTAGCAAGAAAAAAAGGTGCTGCAGAAGGACTTGA
AATAACAGCTGAACTGAAGGATGCTGATTCAGATGAAGAAGAATCGGATGACGATGATGA
AGAAGAAGAAACTGCTCTAGAAAGTTTTACAACACCTCTTGATGAAGAGGAATGTCCTGA
TTTTGTAGACGAATATATTTTGTTCCAAGAAGTTATGCAAAAATTACCAATGCAAGATCC
AACTTGGTATGCAATGCTTAGTTCAAATTTAACTGAAGAACAAAAGAAATCAGTTCAACA
AATTCTCACGATGGCTGAACAGAAACGAAATCAGAAGCGTTCTGATGCTATTGAAAGGAG
TGGAGGATTCCAATTCACACAACAATCAATTCCTACGACATTCAATTTCAGTAGTCCACC
ATCAAATTAAGAAAATTTGGATCCAAATAAATTTGTATACATCAGAGTGAATATTTTTGA
TACACAGAGAATTTGATTTTTTTGTTTCATAATTCATAAATGAAACAATAATTTAAAAAA
GTAGTGACCTCAGTTACATTAACTACATTACATGATATATATTAATTATCCGATATTTTA
TACAACTTATTTTGCTTTTATTTTGTTTGTAATGATTAGTTCTTTTTATTTAAAAATACT
TTTTTTTCCTTGTAATTATTTAAAGAATATAATTACTCTATACGTTTTTTCTTGTCCATT
TTATTAACTTTTACTTTTGAAACGTGTTAAGTTTTTGATGGTTTTCGGAATTTATTCATG
AAAATTAAATATGATATATTGAATGAACTTGATTGGCCTTTAAATAAGACAACTAAAAAA
GAAAATGATGCGCTTTATTCCAGTTGAGATAAAACTTATTAGCTAAAATGCTTAAATTTT
TTGTACCTTCACATTCAAACTTGATAAATTCTTTTCTAAATTTACTTATTTCCTTTTTAT
TTATTTCTACTTATTTTTATAAAATTCTCTAAGAGTGCCACAAATGAGCTTGATTATTAC
AAAATATTATTCAAATAACTACATTCAAACACACTCACCCAAATCATCTCTAAAAAACAT
AAATTGATATAAAAATTTCATAATAGAGACTATATATTTGTAATTAAAAATGTATAAGTG
CACATAAACCATAAAATATCACCTCAAATTCATCAAAAATACTGTATGAATTAAAAGAAT
AACTTTCAATTTATTACGAGTAAAAAAATCGAAATCTGATGAAATAAAAATAATAGCTTG
AGAAAAAAGCGAAAACAGATTTAAATTTTTAATTATTTTATTCTTTTTCCAGAATATTAC
AATGTATATATCACAACACATGGAGTACTGCAGTACTCGAATTAAACTTTTGCT
>g7247.t5 Gene=g7247 Length=697
MSFSEADEELWDMDPVEFIRQKFDVFDDISSPVPAAETLLHSLCKTRKGILNSVMAAFFQ
IINNPNITPKEKDGALHMIGSLSDVLPKKKVFKNQVEQLLVTYVFPGFQSPQGHLRARSC
WVLHSFSEITIKNPENLAKIMQLSTNALLTDPDLPVKVEAAICIQMFLVSQPESSKYIET
QVKNITIELLKIIRETENEDLTNVMQKIVCSFTDQLVPIAVEICQHLAETFRQVVESDDS
SDDRAITAMGLLNTMETLLSVMEEKPEVIASLHPIVLQVICHILQNNINEFYEEAFSLIY
DLTSKTISQDLWKLLELIYAMFEKDGIDYFLDMMPTLYNYVTVDTNAFLSNQNHVLALFN
MCKTILNSTDVTEEAECNAAKLLEVMILQCRGRINECIPTFVELALGRLIREVKTSELRT
MCLQVVIAALYTNTAPLLEMLSKQVMPNTNDSILSHFVKQWIHDTDCFLGIHDRKLWVIG
MCTLITLGNAKPQVLSEVSNDIIPSLILIFDGLKRAYEARAEDEEEEEESDEDEELDDCE
EGISSDEDEMNELDNSYMERVAELARKKGAAEGLEITAELKDADSDEEESDDDDEEEETA
LESFTTPLDEEECPDFVDEYILFQEVMQKLPMQDPTWYAMLSSNLTEEQKKSVQQILTMA
EQKRNQKRSDAIERSGGFQFTQQSIPTTFNFSSPPSN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g7247.t5 | Coils | Coil | Coil | 514 | 534 | - |
| 10 | g7247.t5 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 572 | 1.1E-117 |
| 8 | g7247.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 551 | - |
| 6 | g7247.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 551 | - |
| 4 | g7247.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 609 | - |
| 9 | g7247.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 609 | - |
| 7 | g7247.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 697 | - |
| 5 | g7247.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 697 | - |
| 1 | g7247.t5 | PANTHER | PTHR10997 | IMPORTIN-7, 8, 11 | 1 | 675 | 2.8E-208 |
| 2 | g7247.t5 | PANTHER | PTHR10997:SF27 | IMPORTIN-7 | 1 | 675 | 2.8E-208 |
| 3 | g7247.t5 | SUPERFAMILY | SSF48371 | ARM repeat | 3 | 657 | 5.76E-73 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
