General information for g7247.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Importin-7.
Parent gene
- The parent gene g7247 is located on chr_2: 22344023..22345479 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7247 | g7247.t7 | isoform | g7247.t7 | 22342573 | 22343631 |
| chr_2 | g7247 | g7247.t7 | exon | g7247.t7.exon1 | 22342573 | 22343631 |
| chr_2 | g7247 | g7247.t7 | cds | g7247.t7.CDS1 | 22342575 | 22343579 |
| chr_2 | g7247 | g7247.t7 | TSS | g7247.t7 | NA | NA |
| chr_2 | g7247 | g7247.t7 | TTS | g7247.t7 | NA | NA |
Sequences
>g7247.t7 Gene=g7247 Length=1059
CGTGAGTATACATTTGAATTTATTCCAAATATACAAAATTTATTATTAATAAATGATTTT
ATTATTTTATAGTGTCTCACATTCTTATTCATGGAAAATCATCAAACCACATGCCATTGC
ACTTATTCAAGACGTCATTTTTCCGCTTATGTCATTTTCGGAAGCTGATGAAGAACTTTG
GGATATGGATCCAGTTGAGTTTATAAGACAAAAGTTTGATGTATTTGATGATATTTCATC
ACCAGTTCCAGCAGCCGAAACACTTCTTCATAGTTTATGTAAAACGAGGAAAGGAATTTT
GAATTCAGTTATGGCCGCATTCTTTCAAATCATCAATAATCCAAACATAACACCGAAAGA
AAAGGATGGTGCATTACATATGATTGGAAGTTTAAGTGATGTTTTACCAAAGAAAAAAGT
TTTCAAAAATCAAGTTGAACAATTGCTAGTAACGTATGTTTTCCCAGGCTTTCAAAGTCC
CCAAGGTCATTTACGAGCTCGTTCTTGTTGGGTTCTTCATAGTTTCAGTGAGATAACAAT
TAAAAATCCTGAAAACTTGGCCAAAATTATGCAATTGTCTACGAATGCCCTTCTTACTGA
TCCTGACTTACCTGTGAAAGTTGAAGCTGCTATTTGTATTCAAATGTTTTTAGTTTCTCA
ACCAGAATCAAGCAAATATATTGAAACACAGGTGAAAAATATCACTATTGAATTATTAAA
AATTATTCGTGAAACAGAAAATGAGGACTTGACAAATGTCATGCAAAAAATCGTATGTTC
GTTTACTGATCAATTAGTACCTATTGCAGTAGAAATTTGTCAGCATTTAGCAGAAACATT
TAGACAAGTAGTCGAAAGTGATGATTCAAGTGATGATCGTGCAATCACGGCCATGGGATT
ACTCAATACAATGGAAACTCTTTTGTCAGTAATGGAAGAAAAGCCAGAAGTTATTGCTAG
CTTACATCCGATTGTATTGCAAGTAATTTGCCACATTTTACAAAACAATATTAATGAATT
TTATGAAGAGGCCTTTTCGCTCATCTATGATCTAACTTC
>g7247.t7 Gene=g7247 Length=335
MILLFYSVSHSYSWKIIKPHAIALIQDVIFPLMSFSEADEELWDMDPVEFIRQKFDVFDD
ISSPVPAAETLLHSLCKTRKGILNSVMAAFFQIINNPNITPKEKDGALHMIGSLSDVLPK
KKVFKNQVEQLLVTYVFPGFQSPQGHLRARSCWVLHSFSEITIKNPENLAKIMQLSTNAL
LTDPDLPVKVEAAICIQMFLVSQPESSKYIETQVKNITIELLKIIRETENEDLTNVMQKI
VCSFTDQLVPIAVEICQHLAETFRQVVESDDSSDDRAITAMGLLNTMETLLSVMEEKPEV
IASLHPIVLQVICHILQNNINEFYEEAFSLIYDLT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7247.t7 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 335 | 0e+00 |
| 2 | g7247.t7 | PANTHER | PTHR10997 | IMPORTIN-7, 8, 11 | 7 | 335 | 0e+00 |
| 3 | g7247.t7 | PANTHER | PTHR10997:SF27 | IMPORTIN-7 | 7 | 335 | 0e+00 |
| 1 | g7247.t7 | Pfam | PF08506 | Cse1 | 23 | 115 | 3e-07 |
| 4 | g7247.t7 | SUPERFAMILY | SSF48371 | ARM repeat | 8 | 334 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006886 | intracellular protein transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
