General information for g7265.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Division abnormally delayed protein.
Parent gene
- The parent gene g7265 is located on chr_2: 22505504..22505868 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7265 | g7265.t1 | isoform | g7265.t1 | 22485050 | 22505868 |
| chr_2 | g7265 | g7265.t1 | exon | g7265.t1.exon1 | 22485050 | 22485215 |
| chr_2 | g7265 | g7265.t1 | cds | g7265.t1.CDS1 | 22485050 | 22485215 |
| chr_2 | g7265 | g7265.t1 | exon | g7265.t1.exon2 | 22494096 | 22494219 |
| chr_2 | g7265 | g7265.t1 | cds | g7265.t1.CDS2 | 22494096 | 22494219 |
| chr_2 | g7265 | g7265.t1 | exon | g7265.t1.exon3 | 22494742 | 22495233 |
| chr_2 | g7265 | g7265.t1 | cds | g7265.t1.CDS3 | 22494742 | 22495233 |
| chr_2 | g7265 | g7265.t1 | exon | g7265.t1.exon4 | 22495297 | 22495483 |
| chr_2 | g7265 | g7265.t1 | cds | g7265.t1.CDS4 | 22495297 | 22495483 |
| chr_2 | g7265 | g7265.t1 | exon | g7265.t1.exon5 | 22504656 | 22504876 |
| chr_2 | g7265 | g7265.t1 | cds | g7265.t1.CDS5 | 22504656 | 22504876 |
| chr_2 | g7265 | g7265.t1 | exon | g7265.t1.exon6 | 22505054 | 22505264 |
| chr_2 | g7265 | g7265.t1 | cds | g7265.t1.CDS6 | 22505054 | 22505264 |
| chr_2 | g7265 | g7265.t1 | exon | g7265.t1.exon7 | 22505510 | 22505645 |
| chr_2 | g7265 | g7265.t1 | cds | g7265.t1.CDS7 | 22505510 | 22505645 |
| chr_2 | g7265 | g7265.t1 | exon | g7265.t1.exon8 | 22505720 | 22505868 |
| chr_2 | g7265 | g7265.t1 | cds | g7265.t1.CDS8 | 22505720 | 22505868 |
| chr_2 | g7265 | g7265.t1 | TTS | g7265.t1 | 22505905 | 22505905 |
| chr_2 | g7265 | g7265.t1 | TSS | g7265.t1 | NA | NA |
Sequences
>g7265.t1 Gene=g7265 Length=1686
ATGTCTATTTCTTTTCTTACAGGTGAAATTTGTGGTGGCCACTGTTGTTCAGCAAAGACC
GAACTTGACGTACTGAAAAAGTCTGTCAAAACATTTGAGGGACTAATTAAAATTCAGCTC
AAAAACCTCAAAGGTTTATGGGAATCGACGTATAACATTTACAAAGATCATGTGTTGGAC
TTGTCACATCAGTCAGAAAATAAGACACTCACACTTTTTTCAACTGTATATCGGCGAATG
TCGCCATTATCGCGTGCACCAATTACGGAGCTCTATAAAAGTATACGAAGCTACATTCAA
TCACATAAACCATTAAGTCACGATAGCGGTGGCATCAGTAATGATGAACTCGAAGCAGTT
ATCGAAAAATTCTTTCGTAATCTTTTTCCACTTGCATATCATCATGCCGTACATTCACAG
AATGCTGCTGCTACTACAGCGCTATCACAAGATACCAACGAGGATGTGATGGCCTCACGA
GATTTTCATGTAGATTACAAAAATTGCTTAATAAATTCTTATGAATCGCTTCAGCCTTTC
GGCGAGATTCCATACAGTATAAGTAGATCACTAGTACAAAGCGTTAGTTCAGCTAGCACA
TTACTGCGTGCATTACAACGTGGTGCTGATGTTCTAAGCGAAATTGAAAATTTACCAATC
GAGTCATCGCTAAGCACCAAGTGTCAGCATGCTTTGCTCAAAATGAACTATTGTGCCGCT
TGTAAAGGACACAATTATCATCATATAAAGCCATGCAATGGCTATTGTTCGAATGTTATG
AGGGGATGCCTTGCACAACTCATGGGCGGATTTGATACTGATTGGGCCTCATTTTCGGAA
ACCATTGAACGCTTAATGACACTCGTACGTAACAAGGATGGCATAGAAACGGTCATTAAG
AATCTTGATGGAAAGCTATCAGAAGCCATTATGCATGCCATGACAAATGGACCGGATTTA
GAGAAAAAGGTTCATAAATCATGTGGACAGCCATCGATACGACACAATGAGAGAGCAGTA
ACATCTCAAGAACAACTCGAGGGAGTCGATAAAGCACCGTCATTGGAGAAGCGACAAGAG
CATCATAGTGGATATGGAAACAAGTGGCCTACACCACCTGATACTGAAATGCTTCAATTT
CTTACCGAGCTCGATAAATCAAAGTCATTTTCTTTGCAAATTGCAACCAGTTATTGCGAA
GACGATCGATATCAGAAGCAAGATCGTAATTGCTGGAATGGAGATCATTTGGGAGATTAC
ACGCATAAAGTTATGGACATGCAACTACAAAAGTACAATCCAGAAGTGCCAATAGATCAG
AGCAAAACTGACAACGAAAACAGCAGACTCCATAAAATTAATGATCAACTAATCACGATG
AAAAACTTTTTGAATAAGCAGATGACTCATTTGTCAAGATCAGACGCTGATAAGATGTTT
TCGGACATGGCCGAGGATGGATCAGGCGGTTATCATGCATATGATGATGATGAAGACTAT
GATATGGAAATGTCCGGCTCTGGTAGTCATCCTCTAGACATAAGTCCAGAAACTCCCGTC
ATTGGCGTTACAAGTGTGGTATCTCCAAAGAATACACCAACTAGTGGCGTGTGCAGGCTG
CGAATCTCGTTATTATCGATTCTAGTTTTACCCTCATTCATTGTGATTTTGTTTAACAAA
TTTTAA
>g7265.t1 Gene=g7265 Length=561
MSISFLTGEICGGHCCSAKTELDVLKKSVKTFEGLIKIQLKNLKGLWESTYNIYKDHVLD
LSHQSENKTLTLFSTVYRRMSPLSRAPITELYKSIRSYIQSHKPLSHDSGGISNDELEAV
IEKFFRNLFPLAYHHAVHSQNAAATTALSQDTNEDVMASRDFHVDYKNCLINSYESLQPF
GEIPYSISRSLVQSVSSASTLLRALQRGADVLSEIENLPIESSLSTKCQHALLKMNYCAA
CKGHNYHHIKPCNGYCSNVMRGCLAQLMGGFDTDWASFSETIERLMTLVRNKDGIETVIK
NLDGKLSEAIMHAMTNGPDLEKKVHKSCGQPSIRHNERAVTSQEQLEGVDKAPSLEKRQE
HHSGYGNKWPTPPDTEMLQFLTELDKSKSFSLQIATSYCEDDRYQKQDRNCWNGDHLGDY
THKVMDMQLQKYNPEVPIDQSKTDNENSRLHKINDQLITMKNFLNKQMTHLSRSDADKMF
SDMAEDGSGGYHAYDDDEDYDMEMSGSGSHPLDISPETPVIGVTSVVSPKNTPTSGVCRL
RISLLSILVLPSFIVILFNKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7265.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 369 | - |
| 5 | g7265.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 364 | - |
| 2 | g7265.t1 | PANTHER | PTHR10822:SF29 | DIVISION ABNORMALLY DELAYED PROTEIN | 7 | 535 | 5.7E-142 |
| 3 | g7265.t1 | PANTHER | PTHR10822 | GLYPICAN | 7 | 535 | 5.7E-142 |
| 1 | g7265.t1 | Pfam | PF01153 | Glypican | 8 | 509 | 1.8E-96 |
| 7 | g7265.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 539 | - |
| 8 | g7265.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 540 | 558 | - |
| 6 | g7265.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 559 | 561 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0062023 | collagen-containing extracellular matrix | CC |
| GO:0045880 | positive regulation of smoothened signaling pathway | BP |
| GO:0046658 | anchored component of plasma membrane | CC |
| GO:0030513 | positive regulation of BMP signaling pathway | BP |
| GO:0009966 | regulation of signal transduction | BP |
| GO:0090263 | positive regulation of canonical Wnt signaling pathway | BP |
KEGG
Orthology
- This transcript has been annotated with K02306 (dally)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
