General information for g7276.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7276 is located on chr_2: 22592263..22592610 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7276 | g7276.t1 | isoform | g7276.t1 | 22592263 | 22592610 |
| chr_2 | g7276 | g7276.t1 | exon | g7276.t1.exon1 | 22592263 | 22592610 |
| chr_2 | g7276 | g7276.t1 | cds | g7276.t1.CDS1 | 22592263 | 22592610 |
| chr_2 | g7276 | g7276.t1 | TSS | g7276.t1 | NA | NA |
| chr_2 | g7276 | g7276.t1 | TTS | g7276.t1 | NA | NA |
Sequences
>g7276.t1 Gene=g7276 Length=348
ATGTTTGCTTTTTATAACAGAATACCTTTGAGTTTTTTTTGTAATCCATTTGGTCGTGAA
TTTCGGATGTTTACACATATATATAATGATATACCAACAATTTTCCATACAGAAAAATTT
ATTTCTTGGAACAATGATGCAATTGCTGAAATTGATGCAAATCTGTACACAACAAGTGAA
TCAATGTGTCGATATAGTTCTGACGTGCGTCGATGTTACTTTGAAGGTGAAAGAAAGTTA
CAGTTTTTCAAAAGTTACTCAAAGGCTTTTTGTAGTCTCGAATGTATTGCGAATCATGCA
TTAAAAAATGTGGATGCTTTAGGCTTTCAATGGCAAGAACACAAATGA
>g7276.t1 Gene=g7276 Length=115
MFAFYNRIPLSFFCNPFGREFRMFTHIYNDIPTIFHTEKFISWNNDAIAEIDANLYTTSE
SMCRYSSDVRRCYFEGERKLQFFKSYSKAFCSLECIANHALKNVDALGFQWQEHK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g7276.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 19 | 103 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed