General information for g7285.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein suppressor 2 of zeste.
Parent gene
- The parent gene g7285 is located on chr_2: 22685877..22689281 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7285 | g7285.t4 | TTS | g7285.t4 | 22685116 | 22685116 |
| chr_2 | g7285 | g7285.t4 | isoform | g7285.t4 | 22685877 | 22689281 |
| chr_2 | g7285 | g7285.t4 | exon | g7285.t4.exon1 | 22685877 | 22686132 |
| chr_2 | g7285 | g7285.t4 | cds | g7285.t4.CDS1 | 22685877 | 22686132 |
| chr_2 | g7285 | g7285.t4 | exon | g7285.t4.exon2 | 22686232 | 22686438 |
| chr_2 | g7285 | g7285.t4 | cds | g7285.t4.CDS2 | 22686232 | 22686438 |
| chr_2 | g7285 | g7285.t4 | exon | g7285.t4.exon3 | 22686724 | 22686808 |
| chr_2 | g7285 | g7285.t4 | cds | g7285.t4.CDS3 | 22686724 | 22686808 |
| chr_2 | g7285 | g7285.t4 | exon | g7285.t4.exon4 | 22686929 | 22687140 |
| chr_2 | g7285 | g7285.t4 | cds | g7285.t4.CDS4 | 22686929 | 22687034 |
| chr_2 | g7285 | g7285.t4 | exon | g7285.t4.exon5 | 22688937 | 22689281 |
| chr_2 | g7285 | g7285.t4 | TSS | g7285.t4 | 22689281 | 22689281 |
Sequences
>g7285.t4 Gene=g7285 Length=1105
AGTCGAGTTTTAGTGTTTGACTTGGAGAGTAGACAAATTTTCGCCATCAAAAATTGAATT
TTTTTGTTTATTACTACGTTAATATAAAATTGTGCTGCTGTGAATTATGGCAAATTTGAT
TATTTAGTGCATATTGTTTAAAATTTTGTGTGGTGTGTTGAATTTTGTTGTATTTTCAAT
TGAAAATTTGGGTCGTAAAGTGAAGAGAAGAGAGGAAAAATTCAATTTAATTTTGATTCT
TTCTTTTTTTCATTAAATGAAGAGAAGAAAAAATTTTCTACACGAGGCACAACCGCACTA
ACACATGCATAGGAAGAGAGAAAAATTGTACAAAAACACATTATGAAACTAGTTTAAATT
AAATGGAAAGACGCTAAAAAACACTTAAACTTTAAAAGAAAAATCAGTAAGCGCGAAGTT
GAGTGTGAGAGAAGAAAAATCTTCAACCACAATGATATCACGAAAACGTGTAAGAGATTT
CAACAAAATTTTAACATGCCTTTTGTGCAAAGGATACCTGATAGAGGCTACTACAATCAA
CACATGCATGCATTCATTTTGTCGTTCCTGTATAGTAAAACATATTAAACTTTATGAAAC
ATGTCCAACCTGTGAAAGCGAAATAAGATTAGGAAATTTAAGACCTGACTATCGATTACA
ATCGATTGTTTATAAAATCATTCCCGGACTATATGCCAAAGAGCGTCAGAAAATCACAAA
CGATGGCTACGAGCATCGCATAATTTTAAATGGATCAGGGGCAACACTAGTCAATAAACT
TTACGACATCAGTAATGAGGATGAGACATTGGCAAAGCAATATTTTTATGATCCCGATGA
GCCAATAAGCTTGTCACTCGAATATCATATGGAGTCAATATTTGGTAGTAACAATATCTC
GTCATTGAGTAATAACATTCCGCAAGTGAGATATTTGCAAGCACCAGCAGCATTCAAAGT
GCTTCATTTGAAAAAATTCCTCTCGTCTAAATATGATCTAAATAATCTCAAGAAACCAAT
GTGCATTGATATCATCTATGAAGGCGATATTTTATCGGATGAATTTACACTCATGGATAT
AGCATATACCTACAAATGGGAGCGT
>g7285.t4 Gene=g7285 Length=218
MISRKRVRDFNKILTCLLCKGYLIEATTINTCMHSFCRSCIVKHIKLYETCPTCESEIRL
GNLRPDYRLQSIVYKIIPGLYAKERQKITNDGYEHRIILNGSGATLVNKLYDISNEDETL
AKQYFYDPDEPISLSLEYHMESIFGSNNISSLSNNIPQVRYLQAPAAFKVLHLKKFLSSK
YDLNNLKKPMCIDIIYEGDILSDEFTLMDIAYTYKWER
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g7285.t4 | CDD | cd16525 | RING-HC_PCGF | 14 | 55 | 3.80645E-18 |
| 7 | g7285.t4 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 2 | 97 | 3.2E-19 |
| 6 | g7285.t4 | Gene3D | G3DSA:3.10.20.90 | - | 122 | 218 | 5.3E-26 |
| 3 | g7285.t4 | PANTHER | PTHR10825:SF72 | POLYCOMB GROUP PROTEIN PSC-RELATED | 3 | 218 | 1.5E-66 |
| 4 | g7285.t4 | PANTHER | PTHR10825 | RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT | 3 | 218 | 1.5E-66 |
| 2 | g7285.t4 | Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 16 | 54 | 1.6E-7 |
| 1 | g7285.t4 | Pfam | PF16207 | RAWUL domain RING finger- and WD40-associated ubiquitin-like | 160 | 218 | 1.7E-11 |
| 9 | g7285.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 26 | - |
| 10 | g7285.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 12 | - |
| 11 | g7285.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 13 | 21 | - |
| 12 | g7285.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 22 | 26 | - |
| 8 | g7285.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 27 | 218 | - |
| 14 | g7285.t4 | ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 32 | 41 | - |
| 16 | g7285.t4 | ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 16 | 55 | 10.778 |
| 15 | g7285.t4 | SMART | SM00184 | ring_2 | 16 | 54 | 5.7E-4 |
| 5 | g7285.t4 | SUPERFAMILY | SSF57850 | RING/U-box | 8 | 76 | 1.86E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
