Gene loci information

Transcript annotation

  • This transcript has been annotated as Plexin-B.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7293 g7293.t1 isoform g7293.t1 22728078 22736133
chr_2 g7293 g7293.t1 exon g7293.t1.exon1 22728078 22730011
chr_2 g7293 g7293.t1 cds g7293.t1.CDS1 22728078 22730011
chr_2 g7293 g7293.t1 exon g7293.t1.exon2 22730268 22730445
chr_2 g7293 g7293.t1 cds g7293.t1.CDS2 22730268 22730445
chr_2 g7293 g7293.t1 exon g7293.t1.exon3 22731096 22731299
chr_2 g7293 g7293.t1 cds g7293.t1.CDS3 22731096 22731299
chr_2 g7293 g7293.t1 exon g7293.t1.exon4 22731510 22734754
chr_2 g7293 g7293.t1 cds g7293.t1.CDS4 22731510 22734754
chr_2 g7293 g7293.t1 exon g7293.t1.exon5 22734832 22735012
chr_2 g7293 g7293.t1 cds g7293.t1.CDS5 22734832 22735012
chr_2 g7293 g7293.t1 exon g7293.t1.exon6 22735108 22735290
chr_2 g7293 g7293.t1 cds g7293.t1.CDS6 22735108 22735290
chr_2 g7293 g7293.t1 exon g7293.t1.exon7 22736032 22736133
chr_2 g7293 g7293.t1 cds g7293.t1.CDS7 22736032 22736133
chr_2 g7293 g7293.t1 TSS g7293.t1 NA NA
chr_2 g7293 g7293.t1 TTS g7293.t1 NA NA

Sequences

>g7293.t1 Gene=g7293 Length=6027
ATGACCGTCCGTTGTAAAGTGTTGCTGCATCAAATTACAACAAATACATGCATACTGCTA
TTGGCACTAATTCTTACAATCAAATTTGAAGCACCGATAGCAGTATTGGCAGCGAATGCA
GCGACAACTGCGAGCACATTAAATAGTAATAATAATATTATATTGTCGCAATATCAATTA
CAAAATGACTCCTATTTTACCCATTTGGTGTATGATAAAAAGCGCTCGTGCCTCTATGCT
GGCGCAACAAATCGGATTATTCAGTTCAATAAGAATTTAACTGTAATCAATACTAGTATA
ACAGGACCTAAGCCTGATAGTCCTGTATGTCATGCTGGCGGTTGTCCTGAGGATGTTGAG
ACAATTGAAACAAATAATTTCAATAAACTTCTTATTCTAAATAAATTTGGTGATTCGCTA
ATTTCATGCGGAAGTTTACATCAAGGTGCTTGTGAAATATACGAAAACCTCAATAATTTT
CCCAAAGCACCAAAATATATTGAATTGCCAGTTGTCGCTAATGATGAGAATTCGAGCAGT
TACGCATTTATCGGTCCATCACGCTATACAGCATGGCAACGCGAAGATATTCTATACGTA
GGAATCACATTCACAAATGTGGGTGATTATCGTGACAACGTGCCAGCAATTGCATCAAGA
AAACTGGATGATTTAAATTATGCCGAGTTTTCAATACAGCAATCAAACATTAACATCGAT
GTAAAATATCGAGATCATTTTCTCGTAAATTATATTTATGGATTTAACAGTACCGATTAT
GCATATTTTGTGATAGTTCAAAAGAAAAATCATCTCGTCGAAGAGGCAGGATATCATACA
CGTCTTGCGCGTATTTGTGTTACTGATCCCAATTATGACAGTTATACTGAAGTGACACTG
TCATGTTTAGTTAAGAATCAAGATTATAATATTTTACGTGATGCCAAATTGACAGAAGCA
GGAACACGATTAGGTCAAAAGCTTGGCATTCGAAAAGATGACCAAGTTCTTGTCACAACA
TTCTCGCCTAGTAAAGAAATTACATCAGAACCACAAAATTCATCTGCAATTTGTGTTTAC
ACGTTAAAAGACATTGAAGAAATGTTTAATGAAAATATTCACATGTGTTTCAATGGCACA
ATTAAGGATCGTAATTTGGGTTACATTTCTGGCTCAATTTTAGATGGAAAATGCCCAGTT
GTTGGTTCTATTGGAAATATTCATGACTTTTGTCATGCTGGCCTAAAAATTTCCGGTGTT
GCTGCCATTACTGCAAATGCAATTTTCAATTTTGACAGTGAACTTGTGACATCAGTAATA
ACGACAATAACTGGTCCACATATAATTGCATTTCTCGGCACATCAGAGGGAAATATCAAA
AAAGTGATATTATCAGAGCCTTCAGTTGGTGAATATGACCGAGTCGAAGTTGATCCAGAA
AACTCAATACTCCCAGACACAATGGTCTCGCCTGAGCAAGATGTTTTATATGTGCTATCA
CGTAAGAAAATAACAAAAATGAAAATTGAAAATTGTGCATCGCATACAACTTGCTCAAGT
TGTCTCGGCTCGAATGATTTAATGTGCGGTTGGTGTTCACTTGAGAAACGCTGCACAGTT
CGTAGTGCATGTCAGCGTGACACAAGTGCATCACGTTGGCTTTCAATTGGTGCGGGTCAA
CAGTGCATCGATTTTGAGACAGCTGACCCTGACCGAGTTCCAATCGATCAAATGACTACA
ATTAATTTAGTCATAAAAACATTACCGGAATTACCATCAAATGCTAAATATAAATGTGTA
TTCGGCAATTCGACGCCAATTGATGCTGCTGTAACAAAGAATGGACTGATTTGCCAAACA
CCACAAGTCAAATATCGGCCAACAATTGAGTTTGGCAAGGACCATGTTTTAGTTCCGTTA
TCCGTTCGTTCAAGCGAGACAAACAAGGATTTTGTATCGAGAAGTTTTGCATTCTTCGAT
TGCTCAGTACATGAATCATGCTTCAAGTGCTTAAAATCACAATGGAATTGCAATTGGTGC
ATATACGATAATAAATGTGTTTTCGAGAACTCTACATGCAGAAATACAGCAAATACGATA
ACCGTTGAGAATCAATGTCCTCGCATAAAAGCACCGAAAAATGAAATTCTGTTGCCCAAT
AAAGTGCCAAAAGAGATAAAATTGGAAATAATTAATTTACCACGCCCGCAAAGTGCTCAT
TCGGGATTTTTATGTATTGTGAACATAGAAGGTGCTCACATGATTTTACCAGCACGAATT
GAAGCTAATAAATACATTGTGTGCGATAAAACTCCCTACTCATATGAAGCGAATACCAAT
GAATATAAAGCAAAAGTTGATGTAACGTGGAATAGAAATCATTATATTGATACAATTAGC
ATTACACTATATAAATGCGATGTGTTAGGCTCACATAAAGAGCATGCTGATTGCAGTTTA
TGTGTCACTCGAGATCCAAAATATCAATGCACATGGTGCAGTAATCAATGTGTATTTAAT
GATACTTGCATTCATGGTAGCACAGCTGAATGTCCACGACCAAGAATTGATTCGATTAGA
CCGCTTTCAGGACCAATTGAAGGCGGCACATTGGTAACAATTGAAGGAAGTAATCTCGGT
ATACGCGAAGATGACGTGAGAGGCAAAATTAGAATCGGAAATGTCCTCTGTGAATTAGTA
AATTACGAGATATCAGTGAAAATTGAATGTCGCACGGGCGCTGTAGAAAAGGAAATTACG
GCAACAGTAAAAGTCGGAAACGAGGCGGGAGTGACAGAATCTAATGTATATTTTCAATAT
AAAGACTTCAAAGTAGAGCGAATTGCGCCGACGCAGGGTCCACAATCGGGTGGCACACAG
GTTCAAATCTTTGGTCGCCATCTAAATATTGGCTCGAGTGTTATTGCATATTTAGATGAC
TACATTTGCCATATTAACATAACACATGCTACCAATGATCGACTCGTTTGCACAACAACT
GCTTCACGTTCACCCGAATTTATTCGCACCCTCACATTAATTGTCGATCTCGCAAATCGA
ACCCTCCAATGCAAAAACAACGTCGCCGGAAAAGGCCATAATTCAAATGATATCGGTGCG
GTCACATCATATGCTAATGGAAATGGAATGCGTCATGGTGCTTGCAGTATATACAATTAT
ACGGTCGATCCAAAAATCATGCAAATTAAGCCTTTGAAGAGTTTTAAGAGTGGTGGTCGC
ATGATTACCGTTCATGGCACTAATCTTCACACGATTCAACGACCACAAATGGAAGTAATT
TTTGGTGATGAAAGCATTAATCGAACTGACTGCACAGTAATTAATCCAAATCAGATGGAA
TGTCCATCACCAGCTGTTAGTGAGAAATTTCGATCCTATTTCATTGCACAAAAGACCAAG
ACGAAACGCAACATTGTTAGTCGAACTGACAATTATCGTTATTCAACTTCAACGTCGCCT
TATATGACACCATCAGTTGCATATGCCATTCAAGAGACACAACTCAATTTTCAAATTAGC
TTCATTATGGATAATGTCAAGAGTGTTCGAGATCTCAATAAACATTTCCAACATATTCGC
AGCAATATGATTTATGTCGATGATCCTGTCTTCTTTCCCTTCCTTAATTCAATTCGGCTT
TATAAAGGTGATACACTTGTTATTGAAGGTGAAAATTTAAATCTTGCCTGTGACGAAAGT
GATGTGATTGTAACAGTAGGACAATTGCATTGTAATGTAACAAGTTTAGCTCTAGCACAG
CTCGTTTGTACACCACCCGCTCAACAGCCTCCATCTACAGACGAATATGGCAATGAGAAT
GATATCGATTTACCATTAGTAGTCGTGCGGGTTGGACAGAAGCTACGTTTTCCACTCGGC
TATTTGAAATATGATTTATTAAAGCCATATGCCTTCTCACAAGCAATGATTGTGATTGCA
GCCTCGACCTTTGTTTTGGCTATTGTGCTTGTATTCATCCTAATTGTTTATAGACGAAAG
ACAACTCAGGCAGAACGCGAGTATAAAAAAATTCAAATACAGATGGATACACTTGAAAGT
AATGTTCGTCTTGAATGTAAACAGGCCTTTGCAGAACTACAAACTGATATCATAGATTTG
ACAGCCGATTTAGAAAATCAAGGCATTCCAACGCTAGATCATGTCAATTATATTATGAAA
GTTTTCTTTCCTGGCGTTTCAGATCATCCAATTTTAAATGGTCATAAGGGTCGAATGAAT
ATGCTTCGTACAAATTACGACGCAGCTATGTTGCAATTTGAGCAGTTAATTAACAACAAA
TTCTTCCTTCTGACATTCATCGAAACTTTAGAAGCACAACGTACTTTTAACATTCGTGAT
AAGGTCAATGTTGCATCTTTACTGATGATTGTGCTTATGAACAAAATGGAATATGCCACG
GATATCCTAAAATGGCTGTTATTGCGGCTTGTCGATAAATCAGTGATGACAAAACATCCG
CATTTAATGCTGAGACGAACAGAGAGTGTGGTTGAGAAAATGTTAACCAACTATATGGCC
ATTTGTATGTACAATTATTTACGTGAATATAGTGGCTCATCACTCTTCCTACTCTTTCGA
GCTATAAAACATCAAGTAGAAAAAGGTTTAGTCGATGCAATAACACATGAGGCACGTTAC
TCACTCTCTGAGGACCGTTTGCTTCGTGAACAAGTCGATACGAATGTCGTGACACTGCAT
ATATTGCAAGACGACCTCGAAGATAAAGTGCAATGTAAAGTCCTGGATCAGGACACAATC
ACACAAGTCAAGTCGAAAATTCTCGACGCTCTCTTCAAAAACACTCCCTTCTCAATGCGT
CCATCAGTGCATGATGTTGATTTAGAATGGAGGCATGGTCGTGGTGGTCATTTAACATTA
CAAGATGAAGATCTAACGACAAAAACCTTAAATGGATGGAAACGACTGAATACTTTGGCA
CATTATGGTGTCAAAGAGTCGGCTGTGATGTCACTCGTTGCACGCCAGCACGATTCTTAT
AACATCAACACGTACAGTAAAAATATGTATCCAAATTGTTATTACATCAACAATACACAA
ACGCATGTGCTGATTAATGGCGTGTTAGATTCTTCAGGCATGCATCATCACCATCATCCA
CAATTTATCAATCAAAATCAAACGCTTACCAGTGGTAGTCATAAACAACAATATTGTCGA
GTATATCATCTGGTCAAATCGAATTTGGATGAGCATTATTTTGGCTCGACAACTTTCGGA
AGTAGTAAAAATTCATCACATCATCCTTTCCTTCCACCGTCCAATAATTGTGCGACAGTT
GAACGCACACATAAAGCCATTCCTGAGATCTATTTAACGAGACTTCTCGCCACGAAAGGA
ACGATACAGAAATTTGTTGATGATTTCTTCATGACAATATTGACAGTCAATGAAAAGTTG
CCACCCGCTGTCAAATGGCTCTTTGACTTACTCGACGATGCAGCACGACGACATCCAGAG
ACTAATGATCCAAAAATCATTCATGCTTGGAAGTCAAATAGTTTACCCCTGAGGTTTTGG
GTGAATTTCATAAAAAATCCAGATTTTATATTCGACATAAATAAGACAGTGACAGTAGAT
GCGTGCCTAAGTGTAGTCGCTCAAACATTCATGGATGCATGTTCGACAAATGAGCATCGT
TTGGGAAAAGACTCGCCATCAAATAAATTGCTATTTGCAAAAGACTTGCCACATTATAGA
GAAATGGTGTCACAGTTTTATGCGGATGTTGCCCGTTTACCTCAAATCAGTGATCAAGAG
ATGACCGCGAGCATGCAGAACTTGTCCATTCAGCAGAACGATGAATTTGATACAATTGCA
GCTCTAAAAGAGCTGTATATTTACGTGACGACATACAAGGAACAAATAATTGACGCCCTC
GAAATGGACATCAATTGCAAAAAACTCCATCTTGCCAATAAACTCGAGAATGTTGGCGTC
ACGCTGGACGGAATAGACGATTGCTGA

>g7293.t1 Gene=g7293 Length=2008
MTVRCKVLLHQITTNTCILLLALILTIKFEAPIAVLAANAATTASTLNSNNNIILSQYQL
QNDSYFTHLVYDKKRSCLYAGATNRIIQFNKNLTVINTSITGPKPDSPVCHAGGCPEDVE
TIETNNFNKLLILNKFGDSLISCGSLHQGACEIYENLNNFPKAPKYIELPVVANDENSSS
YAFIGPSRYTAWQREDILYVGITFTNVGDYRDNVPAIASRKLDDLNYAEFSIQQSNINID
VKYRDHFLVNYIYGFNSTDYAYFVIVQKKNHLVEEAGYHTRLARICVTDPNYDSYTEVTL
SCLVKNQDYNILRDAKLTEAGTRLGQKLGIRKDDQVLVTTFSPSKEITSEPQNSSAICVY
TLKDIEEMFNENIHMCFNGTIKDRNLGYISGSILDGKCPVVGSIGNIHDFCHAGLKISGV
AAITANAIFNFDSELVTSVITTITGPHIIAFLGTSEGNIKKVILSEPSVGEYDRVEVDPE
NSILPDTMVSPEQDVLYVLSRKKITKMKIENCASHTTCSSCLGSNDLMCGWCSLEKRCTV
RSACQRDTSASRWLSIGAGQQCIDFETADPDRVPIDQMTTINLVIKTLPELPSNAKYKCV
FGNSTPIDAAVTKNGLICQTPQVKYRPTIEFGKDHVLVPLSVRSSETNKDFVSRSFAFFD
CSVHESCFKCLKSQWNCNWCIYDNKCVFENSTCRNTANTITVENQCPRIKAPKNEILLPN
KVPKEIKLEIINLPRPQSAHSGFLCIVNIEGAHMILPARIEANKYIVCDKTPYSYEANTN
EYKAKVDVTWNRNHYIDTISITLYKCDVLGSHKEHADCSLCVTRDPKYQCTWCSNQCVFN
DTCIHGSTAECPRPRIDSIRPLSGPIEGGTLVTIEGSNLGIREDDVRGKIRIGNVLCELV
NYEISVKIECRTGAVEKEITATVKVGNEAGVTESNVYFQYKDFKVERIAPTQGPQSGGTQ
VQIFGRHLNIGSSVIAYLDDYICHINITHATNDRLVCTTTASRSPEFIRTLTLIVDLANR
TLQCKNNVAGKGHNSNDIGAVTSYANGNGMRHGACSIYNYTVDPKIMQIKPLKSFKSGGR
MITVHGTNLHTIQRPQMEVIFGDESINRTDCTVINPNQMECPSPAVSEKFRSYFIAQKTK
TKRNIVSRTDNYRYSTSTSPYMTPSVAYAIQETQLNFQISFIMDNVKSVRDLNKHFQHIR
SNMIYVDDPVFFPFLNSIRLYKGDTLVIEGENLNLACDESDVIVTVGQLHCNVTSLALAQ
LVCTPPAQQPPSTDEYGNENDIDLPLVVVRVGQKLRFPLGYLKYDLLKPYAFSQAMIVIA
ASTFVLAIVLVFILIVYRRKTTQAEREYKKIQIQMDTLESNVRLECKQAFAELQTDIIDL
TADLENQGIPTLDHVNYIMKVFFPGVSDHPILNGHKGRMNMLRTNYDAAMLQFEQLINNK
FFLLTFIETLEAQRTFNIRDKVNVASLLMIVLMNKMEYATDILKWLLLRLVDKSVMTKHP
HLMLRRTESVVEKMLTNYMAICMYNYLREYSGSSLFLLFRAIKHQVEKGLVDAITHEARY
SLSEDRLLREQVDTNVVTLHILQDDLEDKVQCKVLDQDTITQVKSKILDALFKNTPFSMR
PSVHDVDLEWRHGRGGHLTLQDEDLTTKTLNGWKRLNTLAHYGVKESAVMSLVARQHDSY
NINTYSKNMYPNCYYINNTQTHVLINGVLDSSGMHHHHHPQFINQNQTLTSGSHKQQYCR
VYHLVKSNLDEHYFGSTTFGSSKNSSHHPFLPPSNNCATVERTHKAIPEIYLTRLLATKG
TIQKFVDDFFMTILTVNEKLPPAVKWLFDLLDDAARRHPETNDPKIIHAWKSNSLPLRFW
VNFIKNPDFIFDINKTVTVDACLSVVAQTFMDACSTNEHRLGKDSPSNKLLFAKDLPHYR
EMVSQFYADVARLPQISDQEMTASMQNLSIQQNDEFDTIAALKELYIYVTTYKEQIIDAL
EMDINCKKLHLANKLENVGVTLDGIDDC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
36 g7293.t1 CDD cd11236 Sema_plexin_like 65 510 4.22477E-133
37 g7293.t1 CDD cd01180 IPT_plexin_repeat1 854 942 9.26096E-27
39 g7293.t1 CDD cd00603 IPT_PCSR 1223 1297 1.19229E-5
38 g7293.t1 CDD cd12205 RasGAP_plexin 1785 1998 1.24542E-114
28 g7293.t1 Coils Coil Coil 1341 1361 -
22 g7293.t1 Gene3D G3DSA:2.130.10.10 - 57 522 1.6E-116
26 g7293.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 523 662 8.4E-41
25 g7293.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 672 807 4.6E-16
23 g7293.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 824 942 8.1E-28
27 g7293.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 943 1027 3.1E-10
24 g7293.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1060 1158 5.6E-8
10 g7293.t1 PANTHER PTHR22625:SF65 PLEXIN A, ISOFORM A 37 1020 0.0
13 g7293.t1 PANTHER PTHR22625 PLEXIN 37 1020 0.0
11 g7293.t1 PANTHER PTHR22625:SF65 PLEXIN A, ISOFORM A 1019 1132 0.0
14 g7293.t1 PANTHER PTHR22625 PLEXIN 1019 1132 0.0
9 g7293.t1 PANTHER PTHR22625:SF65 PLEXIN A, ISOFORM A 1157 1999 0.0
12 g7293.t1 PANTHER PTHR22625 PLEXIN 1157 1999 0.0
1 g7293.t1 Pfam PF01403 Sema domain 68 483 9.6E-41
7 g7293.t1 Pfam PF01437 Plexin repeat 511 557 9.7E-9
8 g7293.t1 Pfam PF17960 TIG domain 570 659 1.2E-22
2 g7293.t1 Pfam PF18020 TIG domain found in plexin 715 804 6.9E-24
3 g7293.t1 Pfam PF01833 IPT/TIG domain 854 940 4.9E-12
4 g7293.t1 Pfam PF01833 IPT/TIG domain 1064 1154 4.0E-9
5 g7293.t1 Pfam PF01833 IPT/TIG domain 1216 1293 2.1E-5
6 g7293.t1 Pfam PF08337 Plexin cytoplasmic RasGAP domain 1388 1976 6.0E-238
31 g7293.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 37 -
32 g7293.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 15 -
33 g7293.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 16 27 -
35 g7293.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 28 37 -
30 g7293.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 38 1314 -
34 g7293.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1315 1337 -
29 g7293.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1338 2008 -
51 g7293.t1 ProSiteProfiles PS51004 Sema domain profile. 39 509 50.75
43 g7293.t1 SMART SM00630 sema 66 493 5.2E-88
48 g7293.t1 SMART SM00423 psinew7 511 563 4.2E-11
50 g7293.t1 SMART SM00423 psinew7 660 707 2.1E-5
49 g7293.t1 SMART SM00423 psinew7 805 852 0.022
47 g7293.t1 SMART SM00429 iptmega2 853 941 1.9E-17
45 g7293.t1 SMART SM00429 iptmega2 942 1023 2.3
46 g7293.t1 SMART SM00429 iptmega2 1063 1155 3.4E-12
44 g7293.t1 SMART SM00429 iptmega2 1208 1305 7.4
20 g7293.t1 SUPERFAMILY SSF101912 Sema domain 58 509 2.62E-115
15 g7293.t1 SUPERFAMILY SSF103575 Plexin repeat 508 554 1.07E-8
19 g7293.t1 SUPERFAMILY SSF81296 E set domains 851 941 5.46E-14
17 g7293.t1 SUPERFAMILY SSF81296 E set domains 945 1007 8.27E-8
18 g7293.t1 SUPERFAMILY SSF81296 E set domains 1060 1130 7.38E-13
16 g7293.t1 SUPERFAMILY SSF48350 GTPase activation domain, GAP 1432 1941 3.4E-40
21 g7293.t1 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 40 -
42 g7293.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 26 -
41 g7293.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1315 1337 -
40 g7293.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1462 1480 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0017154 semaphorin receptor activity MF
GO:0007165 signal transduction BP
GO:0005515 protein binding MF
GO:0071526 semaphorin-plexin signaling pathway BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values