General information for g7294.t108
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Catalase.
Parent gene
- The parent gene g7294 is located on chr_2: 22742132..22746850 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7294 | g7294.t108 | TSS | g7294.t108 | 22741498 | 22741498 |
| chr_2 | g7294 | g7294.t108 | isoform | g7294.t108 | 22741731 | 22742724 |
| chr_2 | g7294 | g7294.t108 | exon | g7294.t108.exon1 | 22741731 | 22741775 |
| chr_2 | g7294 | g7294.t108 | exon | g7294.t108.exon2 | 22741922 | 22742038 |
| chr_2 | g7294 | g7294.t108 | exon | g7294.t108.exon3 | 22742132 | 22742724 |
| chr_2 | g7294 | g7294.t108 | cds | g7294.t108.CDS1 | 22742206 | 22742724 |
| chr_2 | g7294 | g7294.t108 | TTS | g7294.t108 | 22743323 | 22743323 |
Sequences
>g7294.t108 Gene=g7294 Length=755
TCTTTGAAAAAGTTGGAAAACGCACTGTGAGTTGTTTTGAACTTTGTGGTGAAAGTGGAT
CAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAATTCTACACTGATGAAGGCA
TTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTCGTGATCCAATCTTGTTCC
CAAGTTTCATTCACACACAAAAGAGAAATCCACAAACACACTTGAAAGACCCCAACATGT
TCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAGTTATGTTTTTGTTTGCTG
ATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATGGTTCACATACATTTAAGA
CTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATTACAAGACTGCACAAGGTG
TCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGGAACAAACCCAGATTATGCAT
TGCAAGATCTTTTTGATGCAATTGGACGTGGTGATTTCCCACAATGGAACTTCTTCATTC
AAGTTATGACAAATGAGCAAGCAGAGCAATACAAATGGAATCCATTTGATGTCACTAAAG
TTTGGTCACACAAAGATTTCCCATTGATTCCAGTTGGTCGAATGGTTTTGGATAGAAATC
CAAACAATTACTTTGCTGAAGTTGAACAAATTGCATTTTGTCCATCAAATATGGTGCCTG
GTATTGAACCATCACCAGATAAGATGTTGCAAGGT
>g7294.t108 Gene=g7294 Length=173
MFWDFLTLRPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQ
GVKNLDIKKAEELAGTNPDYALQDLFDAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVT
KVWSHKDFPLIPVGRMVLDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7294.t108 | Gene3D | G3DSA:2.40.180.10 | Catalase HpII | 1 | 173 | 0.00 |
| 2 | g7294.t108 | PANTHER | PTHR11465:SF9 | CATALASE | 1 | 173 | 0.00 |
| 3 | g7294.t108 | PANTHER | PTHR11465 | CATALASE | 1 | 173 | 0.00 |
| 1 | g7294.t108 | Pfam | PF00199 | Catalase | 1 | 173 | 0.00 |
| 7 | g7294.t108 | ProSiteProfiles | PS51402 | catalase family profile. | 1 | 173 | 34.32 |
| 5 | g7294.t108 | SMART | SM01060 | Catalase_2 | 1 | 173 | 0.00 |
| 4 | g7294.t108 | SUPERFAMILY | SSF56634 | Heme-dependent catalase-like | 1 | 173 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006979 | response to oxidative stress | BP |
| GO:0020037 | heme binding | MF |
| GO:0004096 | catalase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed