Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t11 isoform g7294.t11 22738547 22742481
chr_2 g7294 g7294.t11 exon g7294.t11.exon1 22738547 22738668
chr_2 g7294 g7294.t11 exon g7294.t11.exon2 22738732 22738820
chr_2 g7294 g7294.t11 cds g7294.t11.CDS1 22738773 22738820
chr_2 g7294 g7294.t11 exon g7294.t11.exon3 22741499 22741756
chr_2 g7294 g7294.t11 cds g7294.t11.CDS2 22741499 22741756
chr_2 g7294 g7294.t11 exon g7294.t11.exon4 22741834 22741861
chr_2 g7294 g7294.t11 cds g7294.t11.CDS3 22741834 22741861
chr_2 g7294 g7294.t11 exon g7294.t11.exon5 22741922 22742038
chr_2 g7294 g7294.t11 cds g7294.t11.CDS4 22741922 22742038
chr_2 g7294 g7294.t11 exon g7294.t11.exon6 22742132 22742481
chr_2 g7294 g7294.t11 cds g7294.t11.CDS5 22742132 22742481
chr_2 g7294 g7294.t11 TTS g7294.t11 22743323 22743323
chr_2 g7294 g7294.t11 TSS g7294.t11 NA NA

Sequences

>g7294.t11 Gene=g7294 Length=964
GTAAATTATCAGTTTTAGAATCTATAAATTCACAGTCAATATTTTTACGTGCTACCATTT
ATTCTACAGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAA
TTTGTGTGTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAA
TCAACTTAGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAA
TGGTGCACCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCT
CTTGCAAGATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGA
ACGTGTTGTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATAT
TACAAAATACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGT
GCGATTCTCAACTGTTGGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGG
TTTTGCTGTTAAATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACC
GATTTTCTTCATTCGTGATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAA
TCCACAAACACACTTGAAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGA
ATCAACTCATCAAGTTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCA
TATGAATGGTTATGGTTCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTG
GGTTAAATTCCATTACAAGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGA
GGAATTGGCAGGAACAAACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACG
TGGT

>g7294.t11 Gene=g7294 Length=267
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGGESGSADT
VRDPRGFAVKFYTDEGIWDLVGNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPNMFWDF
LTLRPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNL
DIKKAEELAGTNPDYALQDLFDAIGRG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g7294.t11 Gene3D G3DSA:1.10.8.1230 - 2 63 1.4E-22
9 g7294.t11 Gene3D G3DSA:2.40.180.20 - 64 267 5.0E-116
10 g7294.t11 Gene3D G3DSA:1.20.1370.60 - 148 198 5.0E-116
2 g7294.t11 PANTHER PTHR11465:SF9 CATALASE 19 267 5.2E-132
3 g7294.t11 PANTHER PTHR11465 CATALASE 19 267 5.2E-132
7 g7294.t11 PRINTS PR00067 Catalase signature 36 59 1.1E-40
6 g7294.t11 PRINTS PR00067 Catalase signature 99 117 1.1E-40
5 g7294.t11 PRINTS PR00067 Catalase signature 120 137 1.1E-40
4 g7294.t11 PRINTS PR00067 Catalase signature 139 157 1.1E-40
1 g7294.t11 Pfam PF00199 Catalase 24 267 2.9E-123
12 g7294.t11 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
14 g7294.t11 ProSiteProfiles PS51402 catalase family profile. 19 267 48.877
13 g7294.t11 SMART SM01060 Catalase_2 23 267 5.7E-113
8 g7294.t11 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 267 1.57E-121

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values