Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t21 TSS g7294.t21 22738599 22738599
chr_2 g7294 g7294.t21 isoform g7294.t21 22738614 22742534
chr_2 g7294 g7294.t21 exon g7294.t21.exon1 22738614 22738668
chr_2 g7294 g7294.t21 exon g7294.t21.exon2 22738732 22738820
chr_2 g7294 g7294.t21 cds g7294.t21.CDS1 22738773 22738820
chr_2 g7294 g7294.t21 exon g7294.t21.exon3 22741499 22741779
chr_2 g7294 g7294.t21 cds g7294.t21.CDS2 22741499 22741779
chr_2 g7294 g7294.t21 exon g7294.t21.exon4 22741922 22742038
chr_2 g7294 g7294.t21 cds g7294.t21.CDS3 22741922 22741928
chr_2 g7294 g7294.t21 exon g7294.t21.exon5 22742132 22742534
chr_2 g7294 g7294.t21 TTS g7294.t21 22743323 22743323

Sequences

>g7294.t21 Gene=g7294 Length=945
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAA
TACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTGTGAGTTGTTTTGAACTT
TTTTTGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAA
ATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCAT
TCGTGATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAAACACA
CTTGAAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCA
AGTTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTA
TGGTTCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCA
TTACAAGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGG
AACAAACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGATTTCCC
ACAATGGAACTTCTTCATTCAAGTTATGACAAATGAGCAAGCAGA

>g7294.t21 Gene=g7294 Length=111
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTVSCFELFLW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7294.t21 Gene3D G3DSA:1.10.8.1230 - 2 63 2.0E-23
6 g7294.t21 Gene3D G3DSA:2.40.180.20 - 64 102 1.0E-16
2 g7294.t21 PANTHER PTHR11465:SF25 PEROXISOMAL CATALASE 1 3 103 1.4E-36
3 g7294.t21 PANTHER PTHR11465 CATALASE 3 103 1.4E-36
1 g7294.t21 Pfam PF00199 Catalase 24 103 9.9E-32
5 g7294.t21 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
8 g7294.t21 ProSiteProfiles PS51402 catalase family profile. 19 111 14.505
4 g7294.t21 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 102 1.03E-33

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed