Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t33 TSS g7294.t33 22738599 22738599
chr_2 g7294 g7294.t33 isoform g7294.t33 22738614 22743186
chr_2 g7294 g7294.t33 exon g7294.t33.exon1 22738614 22738668
chr_2 g7294 g7294.t33 exon g7294.t33.exon2 22738732 22738820
chr_2 g7294 g7294.t33 cds g7294.t33.CDS1 22738773 22738820
chr_2 g7294 g7294.t33 exon g7294.t33.exon3 22741499 22741756
chr_2 g7294 g7294.t33 cds g7294.t33.CDS2 22741499 22741756
chr_2 g7294 g7294.t33 exon g7294.t33.exon4 22741834 22741861
chr_2 g7294 g7294.t33 cds g7294.t33.CDS3 22741834 22741861
chr_2 g7294 g7294.t33 exon g7294.t33.exon5 22741922 22742038
chr_2 g7294 g7294.t33 cds g7294.t33.CDS4 22741922 22742038
chr_2 g7294 g7294.t33 exon g7294.t33.exon6 22742237 22743186
chr_2 g7294 g7294.t33 cds g7294.t33.CDS5 22742237 22743186
chr_2 g7294 g7294.t33 TTS g7294.t33 22743323 22743323

Sequences

>g7294.t33 Gene=g7294 Length=1497
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAA
TACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGTGCGATTC
TCAACTGTTGGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCT
GTTAAATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTC
TTCATTCAATCAACTCATCAAGTTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGT
TTTCGTCATATGAATGGTTATGGTTCACATACATTTAAGACTGTTAATGACAAGGGTGAA
TCATTCTGGGTTAAATTCCATTACAAGACTGCACAAGGTGTCAAAAATTTGGATATCAAG
AAAGCTGAGGAATTGGCAGGAACAAACCCAGATTATGCATTGCAAGATCTTTTTGATGCA
ATTGGACGTGGTGATTTCCCACAATGGAACTTCTTCATTCAAGTTATGACAAATGAGCAA
GCAGAGCAATACAAATGGAATCCATTTGATGTCACTAAAGTTTGGTCACACAAAGATTTC
CCATTGATTCCAGTTGGTCGAATGGTTTTGGATAGAAATCCAAACAATTACTTTGCTGAA
GTTGAACAAATTGCATTTTGTCCATCAAATATGGTGCCTGGTATTGAACCATCACCAGAT
AAGATGTTGCAAGGTCGTCTTTTCTCATATGTCGACACTCATCGTCATCGTTTGGGTGCA
AATTATCAAATGTTACCAGTTAACTGTCCATACAGAGTCAGTATCAAGAACTATCAACGC
GATGGTCCAATGTGCTTCGACAGTCAGGGTAATGCACCAAATTATTATCCAAACTCATTC
GGTGGACCAGAACCAATTAAACGTGCTGTTGATTTGCAACCACCATACAAAGTTTCTGGC
GAAGTTTTCCGTTATGATAGTGCTGATGAAGACAATTACAGTCAAGCAACTCTTTTCTGG
AATAATGTTTTGGATGAACCTGCAAGAAACCGCATGGTTGAAAATATTGCTGGACATCTT
GTTAATGCTGCAGAATTTATTCAAGAACGCGGAGTCAATATGTTCTCAAATGTATCTTCT
GATTTCGGTCAAAAATTGAGAGAAGCACTCAATCTTAAGAAACAAGGCAAATTGTAA

>g7294.t33 Gene=g7294 Length=466
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGGESGSADT
VRDPRGFAVKFYTDEGIWDLVGNNTPIFFIQSTHQVMFLFADRGIPDGFRHMNGYGSHTF
KTVNDKGESFWVKFHYKTAQGVKNLDIKKAEELAGTNPDYALQDLFDAIGRGDFPQWNFF
IQVMTNEQAEQYKWNPFDVTKVWSHKDFPLIPVGRMVLDRNPNNYFAEVEQIAFCPSNMV
PGIEPSPDKMLQGRLFSYVDTHRHRLGANYQMLPVNCPYRVSIKNYQRDGPMCFDSQGNA
PNYYPNSFGGPEPIKRAVDLQPPYKVSGEVFRYDSADEDNYSQATLFWNNVLDEPARNRM
VENIAGHLVNAAEFIQERGVNMFSNVSSDFGQKLREALNLKKQGKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7294.t33 Gene3D G3DSA:2.40.180.10 Catalase HpII 16 152 5.0E-68
14 g7294.t33 Gene3D G3DSA:2.40.180.10 Catalase HpII 153 463 7.8E-144
5 g7294.t33 PANTHER PTHR11465:SF9 CATALASE 20 151 1.1E-206
7 g7294.t33 PANTHER PTHR11465 CATALASE 20 151 1.1E-206
4 g7294.t33 PANTHER PTHR11465:SF9 CATALASE 152 462 1.1E-206
6 g7294.t33 PANTHER PTHR11465 CATALASE 152 462 1.1E-206
16 g7294.t33 PIRSF PIRSF038928 Catalase_clade1-3 10 153 6.9E-63
15 g7294.t33 PIRSF PIRSF038928 Catalase_clade1-3 150 464 6.5E-123
11 g7294.t33 PRINTS PR00067 Catalase signature 36 59 4.0E-35
10 g7294.t33 PRINTS PR00067 Catalase signature 99 117 4.0E-35
9 g7294.t33 PRINTS PR00067 Catalase signature 120 137 4.0E-35
8 g7294.t33 PRINTS PR00067 Catalase signature 139 157 4.0E-35
3 g7294.t33 Pfam PF00199 Catalase 24 151 5.1E-64
2 g7294.t33 Pfam PF00199 Catalase 151 369 5.0E-104
1 g7294.t33 Pfam PF06628 Catalase-related immune-responsive 396 458 1.4E-18
18 g7294.t33 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
17 g7294.t33 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 314 322 -
20 g7294.t33 ProSiteProfiles PS51402 catalase family profile. 19 464 70.643
19 g7294.t33 SMART SM01060 Catalase_2 23 372 4.4E-237
12 g7294.t33 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 462 1.57E-187

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed